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Cascaded neural network-based CT image processing for aortic root analysis
PURPOSE: Careful assessment of the aortic root is paramount to select an appropriate prosthesis for transcatheter aortic valve implantation (TAVI). Relevant information about the aortic root anatomy, such as the aortic annulus diameter, can be extracted from pre-interventional CT. In this work, we i...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8873075/ https://www.ncbi.nlm.nih.gov/pubmed/35066774 http://dx.doi.org/10.1007/s11548-021-02554-3 |
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author | Krüger, Nina Meyer, Alexander Tautz, Lennart Hüllebrand, Markus Wamala, Isaac Pullig, Marius Kofler, Markus Kempfert, Jörg Sündermann, Simon Falk, Volkmar Hennemuth, Anja |
author_facet | Krüger, Nina Meyer, Alexander Tautz, Lennart Hüllebrand, Markus Wamala, Isaac Pullig, Marius Kofler, Markus Kempfert, Jörg Sündermann, Simon Falk, Volkmar Hennemuth, Anja |
author_sort | Krüger, Nina |
collection | PubMed |
description | PURPOSE: Careful assessment of the aortic root is paramount to select an appropriate prosthesis for transcatheter aortic valve implantation (TAVI). Relevant information about the aortic root anatomy, such as the aortic annulus diameter, can be extracted from pre-interventional CT. In this work, we investigate a neural network-based approach for segmenting the aortic root as a basis for obtaining these parameters. METHODS: To support valve prosthesis selection, geometric measures of the aortic root are extracted from the patient’s CT scan using a cascade of convolutional neural networks (CNNs). First, the image is reduced to the aortic root, valve, and left ventricular outflow tract (LVOT); within that subimage, the aortic valve and ascending aorta are segmented; and finally, the region around the aortic annulus. From the segmented annulus region, we infer the annulus orientation using principal component analysis (PCA). The area-derived diameter of the annulus is approximated based on the segmentation of the aortic root and LVOT and the plane orientation resulting from the PCA. RESULTS: The cascade of CNNs was trained using 90 expert-annotated contrast-enhanced CT scans routinely acquired for TAVI planning. Segmentation of the aorta and valve within the region of interest achieved an F1 score of 0.94 on the test set of 36 patients. The area-derived diameter within the annulus region was determined with a mean error below 2 mm between the automatic measurement and the diameter derived from annotations. The calculated diameters and resulting errors are comparable to published results of alternative approaches. CONCLUSIONS: The cascaded neural network approach enabled the assessment of the aortic root with a relatively small training set. The processing time amounts to 30 s per patient, facilitating time-efficient, reproducible measurements. An extended training data set, including different levels of calcification or special cases (e.g., pre-implanted valves), could further improve this method’s applicability and robustness. |
format | Online Article Text |
id | pubmed-8873075 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-88730752022-03-02 Cascaded neural network-based CT image processing for aortic root analysis Krüger, Nina Meyer, Alexander Tautz, Lennart Hüllebrand, Markus Wamala, Isaac Pullig, Marius Kofler, Markus Kempfert, Jörg Sündermann, Simon Falk, Volkmar Hennemuth, Anja Int J Comput Assist Radiol Surg Original Article PURPOSE: Careful assessment of the aortic root is paramount to select an appropriate prosthesis for transcatheter aortic valve implantation (TAVI). Relevant information about the aortic root anatomy, such as the aortic annulus diameter, can be extracted from pre-interventional CT. In this work, we investigate a neural network-based approach for segmenting the aortic root as a basis for obtaining these parameters. METHODS: To support valve prosthesis selection, geometric measures of the aortic root are extracted from the patient’s CT scan using a cascade of convolutional neural networks (CNNs). First, the image is reduced to the aortic root, valve, and left ventricular outflow tract (LVOT); within that subimage, the aortic valve and ascending aorta are segmented; and finally, the region around the aortic annulus. From the segmented annulus region, we infer the annulus orientation using principal component analysis (PCA). The area-derived diameter of the annulus is approximated based on the segmentation of the aortic root and LVOT and the plane orientation resulting from the PCA. RESULTS: The cascade of CNNs was trained using 90 expert-annotated contrast-enhanced CT scans routinely acquired for TAVI planning. Segmentation of the aorta and valve within the region of interest achieved an F1 score of 0.94 on the test set of 36 patients. The area-derived diameter within the annulus region was determined with a mean error below 2 mm between the automatic measurement and the diameter derived from annotations. The calculated diameters and resulting errors are comparable to published results of alternative approaches. CONCLUSIONS: The cascaded neural network approach enabled the assessment of the aortic root with a relatively small training set. The processing time amounts to 30 s per patient, facilitating time-efficient, reproducible measurements. An extended training data set, including different levels of calcification or special cases (e.g., pre-implanted valves), could further improve this method’s applicability and robustness. Springer International Publishing 2022-01-23 2022 /pmc/articles/PMC8873075/ /pubmed/35066774 http://dx.doi.org/10.1007/s11548-021-02554-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Krüger, Nina Meyer, Alexander Tautz, Lennart Hüllebrand, Markus Wamala, Isaac Pullig, Marius Kofler, Markus Kempfert, Jörg Sündermann, Simon Falk, Volkmar Hennemuth, Anja Cascaded neural network-based CT image processing for aortic root analysis |
title | Cascaded neural network-based CT image processing for aortic root analysis |
title_full | Cascaded neural network-based CT image processing for aortic root analysis |
title_fullStr | Cascaded neural network-based CT image processing for aortic root analysis |
title_full_unstemmed | Cascaded neural network-based CT image processing for aortic root analysis |
title_short | Cascaded neural network-based CT image processing for aortic root analysis |
title_sort | cascaded neural network-based ct image processing for aortic root analysis |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8873075/ https://www.ncbi.nlm.nih.gov/pubmed/35066774 http://dx.doi.org/10.1007/s11548-021-02554-3 |
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