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Robust tests for combining p-values under arbitrary dependency structures
Recently Liu and Xie proposed a p-value combination test based on the Cauchy distribution (CCT). They showed that when the significance levels are small, CCT can control type I error rate and the resulting p-value can be simply approximated using a Cauchy distribution. One very special and attractiv...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8873210/ https://www.ncbi.nlm.nih.gov/pubmed/35210502 http://dx.doi.org/10.1038/s41598-022-07094-7 |
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author | Chen, Zhongxue |
author_facet | Chen, Zhongxue |
author_sort | Chen, Zhongxue |
collection | PubMed |
description | Recently Liu and Xie proposed a p-value combination test based on the Cauchy distribution (CCT). They showed that when the significance levels are small, CCT can control type I error rate and the resulting p-value can be simply approximated using a Cauchy distribution. One very special and attractive property of CCT is that it is applicable to situations where the p-values to be combined are dependent. However, in this paper, we show that under some conditions the commonly used MinP test is much more powerful than CCT. In addition, under some other situations, CCT is powerless at all. Therefore, we should use CCT with caution. We also proposed new robust p-value combination tests using a second MinP/CCT to combine the dependent p-values obtained from CCT and MinP applied to the original p-values. We call the new tests MinP-CCT-MinP (MCM) and CCT-MinP-CCT (CMC). We study the performance of the new tests by comparing them with CCT and MinP using comprehensive simulation study. Our study shows that the proposed tests, MCM and CMC, are robust and powerful under many conditions, and can be considered as alternatives of CCT or MinP. |
format | Online Article Text |
id | pubmed-8873210 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-88732102022-02-25 Robust tests for combining p-values under arbitrary dependency structures Chen, Zhongxue Sci Rep Article Recently Liu and Xie proposed a p-value combination test based on the Cauchy distribution (CCT). They showed that when the significance levels are small, CCT can control type I error rate and the resulting p-value can be simply approximated using a Cauchy distribution. One very special and attractive property of CCT is that it is applicable to situations where the p-values to be combined are dependent. However, in this paper, we show that under some conditions the commonly used MinP test is much more powerful than CCT. In addition, under some other situations, CCT is powerless at all. Therefore, we should use CCT with caution. We also proposed new robust p-value combination tests using a second MinP/CCT to combine the dependent p-values obtained from CCT and MinP applied to the original p-values. We call the new tests MinP-CCT-MinP (MCM) and CCT-MinP-CCT (CMC). We study the performance of the new tests by comparing them with CCT and MinP using comprehensive simulation study. Our study shows that the proposed tests, MCM and CMC, are robust and powerful under many conditions, and can be considered as alternatives of CCT or MinP. Nature Publishing Group UK 2022-02-24 /pmc/articles/PMC8873210/ /pubmed/35210502 http://dx.doi.org/10.1038/s41598-022-07094-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Chen, Zhongxue Robust tests for combining p-values under arbitrary dependency structures |
title | Robust tests for combining p-values under arbitrary dependency structures |
title_full | Robust tests for combining p-values under arbitrary dependency structures |
title_fullStr | Robust tests for combining p-values under arbitrary dependency structures |
title_full_unstemmed | Robust tests for combining p-values under arbitrary dependency structures |
title_short | Robust tests for combining p-values under arbitrary dependency structures |
title_sort | robust tests for combining p-values under arbitrary dependency structures |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8873210/ https://www.ncbi.nlm.nih.gov/pubmed/35210502 http://dx.doi.org/10.1038/s41598-022-07094-7 |
work_keys_str_mv | AT chenzhongxue robusttestsforcombiningpvaluesunderarbitrarydependencystructures |