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Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo

Cord-forming (CF) fungi are found worldwide; however, tropical CF fungi are poorly documented. They play an essential role in forest ecosystems by interconnecting nutrient resources and aiding in the decomposition of plant matter and woody litter. CF fungi samples were collected from two forest cons...

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Autores principales: Foster, Rachel, Hartikainen, Hanna, Hall, Andie, Bass, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874581/
https://www.ncbi.nlm.nih.gov/pubmed/35208694
http://dx.doi.org/10.3390/microorganisms10020239
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author Foster, Rachel
Hartikainen, Hanna
Hall, Andie
Bass, David
author_facet Foster, Rachel
Hartikainen, Hanna
Hall, Andie
Bass, David
author_sort Foster, Rachel
collection PubMed
description Cord-forming (CF) fungi are found worldwide; however, tropical CF fungi are poorly documented. They play an essential role in forest ecosystems by interconnecting nutrient resources and aiding in the decomposition of plant matter and woody litter. CF fungi samples were collected from two forest conservation sites in the Sabah region of Malaysian Borneo. Sequencing and phylogenetic analysis of the ribosomal rRNA gene array 18S to 28S region from cords collected placed all of the collected specimens in Agaricomycetes (Basidiomycetes), specifically within the orders Trechisporales, Phallales, Hymenochaetales, Polyporales, and Agaricales. Comparison of the cord-derived sequences against GenBank and UNITE sequence databases, as well as phylogenetic analyses, revealed they were all novel sequences types. Many of these novel lineages were found to be closely related to other basidiomycetes commonly found in tropical forests, suggesting a large undiscovered tropical fungal diversity in Borneo that has been detected independently of sampling fruiting bodies. We show how these sequence types relate to the morphologies of the cords from which they were sampled. We also highlight how rapid, small-scale sampling can be a useful tool as an easy and relatively unbiased way of collecting data on cord-forming fungi in difficult-to-access, complex forest environments, independently of locating and sampling sporophores.
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spelling pubmed-88745812022-02-26 Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo Foster, Rachel Hartikainen, Hanna Hall, Andie Bass, David Microorganisms Article Cord-forming (CF) fungi are found worldwide; however, tropical CF fungi are poorly documented. They play an essential role in forest ecosystems by interconnecting nutrient resources and aiding in the decomposition of plant matter and woody litter. CF fungi samples were collected from two forest conservation sites in the Sabah region of Malaysian Borneo. Sequencing and phylogenetic analysis of the ribosomal rRNA gene array 18S to 28S region from cords collected placed all of the collected specimens in Agaricomycetes (Basidiomycetes), specifically within the orders Trechisporales, Phallales, Hymenochaetales, Polyporales, and Agaricales. Comparison of the cord-derived sequences against GenBank and UNITE sequence databases, as well as phylogenetic analyses, revealed they were all novel sequences types. Many of these novel lineages were found to be closely related to other basidiomycetes commonly found in tropical forests, suggesting a large undiscovered tropical fungal diversity in Borneo that has been detected independently of sampling fruiting bodies. We show how these sequence types relate to the morphologies of the cords from which they were sampled. We also highlight how rapid, small-scale sampling can be a useful tool as an easy and relatively unbiased way of collecting data on cord-forming fungi in difficult-to-access, complex forest environments, independently of locating and sampling sporophores. MDPI 2022-01-22 /pmc/articles/PMC8874581/ /pubmed/35208694 http://dx.doi.org/10.3390/microorganisms10020239 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Foster, Rachel
Hartikainen, Hanna
Hall, Andie
Bass, David
Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo
title Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo
title_full Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo
title_fullStr Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo
title_full_unstemmed Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo
title_short Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo
title_sort diversity and phylogeny of novel cord-forming fungi from borneo
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874581/
https://www.ncbi.nlm.nih.gov/pubmed/35208694
http://dx.doi.org/10.3390/microorganisms10020239
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