Cargando…

NP Analyst: An Open Online Platform for Compound Activity Mapping

[Image: see text] Few tools exist in natural products discovery to integrate biological screening and untargeted mass spectrometry data at the library scale. Previously, we reported Compound Activity Mapping as a strategy for predicting compound bioactivity profiles directly from primary screening r...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, Sanghoon, van Santen, Jeffrey A., Farzaneh, Nima, Liu, Dennis Y., Pye, Cameron R., Baumeister, Tim U. H., Wong, Weng Ruh, Linington, Roger G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874762/
https://www.ncbi.nlm.nih.gov/pubmed/35233454
http://dx.doi.org/10.1021/acscentsci.1c01108
Descripción
Sumario:[Image: see text] Few tools exist in natural products discovery to integrate biological screening and untargeted mass spectrometry data at the library scale. Previously, we reported Compound Activity Mapping as a strategy for predicting compound bioactivity profiles directly from primary screening results on extract libraries. We now present NP Analyst, an open online platform for Compound Activity Mapping that accepts bioassay data of almost any type, and is compatible with mass spectrometry data from major instrument manufacturers via the mzML format. In addition, NP Analyst will accept processed mass spectrometry data from the MZmine 2 and GNPS open-source platforms, making it a versatile tool for integration with existing discovery workflows. We demonstrate the utility of this new tool for both the dereplication of known compounds and the discovery of novel bioactive natural products using a challenging low-resolution antimicrobial bioassay data set. This new platform is available at www.npanalyst.org.