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NP Analyst: An Open Online Platform for Compound Activity Mapping
[Image: see text] Few tools exist in natural products discovery to integrate biological screening and untargeted mass spectrometry data at the library scale. Previously, we reported Compound Activity Mapping as a strategy for predicting compound bioactivity profiles directly from primary screening r...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874762/ https://www.ncbi.nlm.nih.gov/pubmed/35233454 http://dx.doi.org/10.1021/acscentsci.1c01108 |
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author | Lee, Sanghoon van Santen, Jeffrey A. Farzaneh, Nima Liu, Dennis Y. Pye, Cameron R. Baumeister, Tim U. H. Wong, Weng Ruh Linington, Roger G. |
author_facet | Lee, Sanghoon van Santen, Jeffrey A. Farzaneh, Nima Liu, Dennis Y. Pye, Cameron R. Baumeister, Tim U. H. Wong, Weng Ruh Linington, Roger G. |
author_sort | Lee, Sanghoon |
collection | PubMed |
description | [Image: see text] Few tools exist in natural products discovery to integrate biological screening and untargeted mass spectrometry data at the library scale. Previously, we reported Compound Activity Mapping as a strategy for predicting compound bioactivity profiles directly from primary screening results on extract libraries. We now present NP Analyst, an open online platform for Compound Activity Mapping that accepts bioassay data of almost any type, and is compatible with mass spectrometry data from major instrument manufacturers via the mzML format. In addition, NP Analyst will accept processed mass spectrometry data from the MZmine 2 and GNPS open-source platforms, making it a versatile tool for integration with existing discovery workflows. We demonstrate the utility of this new tool for both the dereplication of known compounds and the discovery of novel bioactive natural products using a challenging low-resolution antimicrobial bioassay data set. This new platform is available at www.npanalyst.org. |
format | Online Article Text |
id | pubmed-8874762 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-88747622022-02-28 NP Analyst: An Open Online Platform for Compound Activity Mapping Lee, Sanghoon van Santen, Jeffrey A. Farzaneh, Nima Liu, Dennis Y. Pye, Cameron R. Baumeister, Tim U. H. Wong, Weng Ruh Linington, Roger G. ACS Cent Sci [Image: see text] Few tools exist in natural products discovery to integrate biological screening and untargeted mass spectrometry data at the library scale. Previously, we reported Compound Activity Mapping as a strategy for predicting compound bioactivity profiles directly from primary screening results on extract libraries. We now present NP Analyst, an open online platform for Compound Activity Mapping that accepts bioassay data of almost any type, and is compatible with mass spectrometry data from major instrument manufacturers via the mzML format. In addition, NP Analyst will accept processed mass spectrometry data from the MZmine 2 and GNPS open-source platforms, making it a versatile tool for integration with existing discovery workflows. We demonstrate the utility of this new tool for both the dereplication of known compounds and the discovery of novel bioactive natural products using a challenging low-resolution antimicrobial bioassay data set. This new platform is available at www.npanalyst.org. American Chemical Society 2022-01-24 2022-02-23 /pmc/articles/PMC8874762/ /pubmed/35233454 http://dx.doi.org/10.1021/acscentsci.1c01108 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Lee, Sanghoon van Santen, Jeffrey A. Farzaneh, Nima Liu, Dennis Y. Pye, Cameron R. Baumeister, Tim U. H. Wong, Weng Ruh Linington, Roger G. NP Analyst: An Open Online Platform for Compound Activity Mapping |
title | NP Analyst: An Open Online Platform for Compound Activity
Mapping |
title_full | NP Analyst: An Open Online Platform for Compound Activity
Mapping |
title_fullStr | NP Analyst: An Open Online Platform for Compound Activity
Mapping |
title_full_unstemmed | NP Analyst: An Open Online Platform for Compound Activity
Mapping |
title_short | NP Analyst: An Open Online Platform for Compound Activity
Mapping |
title_sort | np analyst: an open online platform for compound activity
mapping |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874762/ https://www.ncbi.nlm.nih.gov/pubmed/35233454 http://dx.doi.org/10.1021/acscentsci.1c01108 |
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