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NP Analyst: An Open Online Platform for Compound Activity Mapping

[Image: see text] Few tools exist in natural products discovery to integrate biological screening and untargeted mass spectrometry data at the library scale. Previously, we reported Compound Activity Mapping as a strategy for predicting compound bioactivity profiles directly from primary screening r...

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Detalles Bibliográficos
Autores principales: Lee, Sanghoon, van Santen, Jeffrey A., Farzaneh, Nima, Liu, Dennis Y., Pye, Cameron R., Baumeister, Tim U. H., Wong, Weng Ruh, Linington, Roger G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874762/
https://www.ncbi.nlm.nih.gov/pubmed/35233454
http://dx.doi.org/10.1021/acscentsci.1c01108
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author Lee, Sanghoon
van Santen, Jeffrey A.
Farzaneh, Nima
Liu, Dennis Y.
Pye, Cameron R.
Baumeister, Tim U. H.
Wong, Weng Ruh
Linington, Roger G.
author_facet Lee, Sanghoon
van Santen, Jeffrey A.
Farzaneh, Nima
Liu, Dennis Y.
Pye, Cameron R.
Baumeister, Tim U. H.
Wong, Weng Ruh
Linington, Roger G.
author_sort Lee, Sanghoon
collection PubMed
description [Image: see text] Few tools exist in natural products discovery to integrate biological screening and untargeted mass spectrometry data at the library scale. Previously, we reported Compound Activity Mapping as a strategy for predicting compound bioactivity profiles directly from primary screening results on extract libraries. We now present NP Analyst, an open online platform for Compound Activity Mapping that accepts bioassay data of almost any type, and is compatible with mass spectrometry data from major instrument manufacturers via the mzML format. In addition, NP Analyst will accept processed mass spectrometry data from the MZmine 2 and GNPS open-source platforms, making it a versatile tool for integration with existing discovery workflows. We demonstrate the utility of this new tool for both the dereplication of known compounds and the discovery of novel bioactive natural products using a challenging low-resolution antimicrobial bioassay data set. This new platform is available at www.npanalyst.org.
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spelling pubmed-88747622022-02-28 NP Analyst: An Open Online Platform for Compound Activity Mapping Lee, Sanghoon van Santen, Jeffrey A. Farzaneh, Nima Liu, Dennis Y. Pye, Cameron R. Baumeister, Tim U. H. Wong, Weng Ruh Linington, Roger G. ACS Cent Sci [Image: see text] Few tools exist in natural products discovery to integrate biological screening and untargeted mass spectrometry data at the library scale. Previously, we reported Compound Activity Mapping as a strategy for predicting compound bioactivity profiles directly from primary screening results on extract libraries. We now present NP Analyst, an open online platform for Compound Activity Mapping that accepts bioassay data of almost any type, and is compatible with mass spectrometry data from major instrument manufacturers via the mzML format. In addition, NP Analyst will accept processed mass spectrometry data from the MZmine 2 and GNPS open-source platforms, making it a versatile tool for integration with existing discovery workflows. We demonstrate the utility of this new tool for both the dereplication of known compounds and the discovery of novel bioactive natural products using a challenging low-resolution antimicrobial bioassay data set. This new platform is available at www.npanalyst.org. American Chemical Society 2022-01-24 2022-02-23 /pmc/articles/PMC8874762/ /pubmed/35233454 http://dx.doi.org/10.1021/acscentsci.1c01108 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Lee, Sanghoon
van Santen, Jeffrey A.
Farzaneh, Nima
Liu, Dennis Y.
Pye, Cameron R.
Baumeister, Tim U. H.
Wong, Weng Ruh
Linington, Roger G.
NP Analyst: An Open Online Platform for Compound Activity Mapping
title NP Analyst: An Open Online Platform for Compound Activity Mapping
title_full NP Analyst: An Open Online Platform for Compound Activity Mapping
title_fullStr NP Analyst: An Open Online Platform for Compound Activity Mapping
title_full_unstemmed NP Analyst: An Open Online Platform for Compound Activity Mapping
title_short NP Analyst: An Open Online Platform for Compound Activity Mapping
title_sort np analyst: an open online platform for compound activity mapping
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874762/
https://www.ncbi.nlm.nih.gov/pubmed/35233454
http://dx.doi.org/10.1021/acscentsci.1c01108
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