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NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments
Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society for Neuroscience
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874953/ https://www.ncbi.nlm.nih.gov/pubmed/35074827 http://dx.doi.org/10.1523/ENEURO.0073-21.2022 |
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author | García Murillo, Daniel Zhao, Yixin Rogovin, Ora S. Zhang, Kelly Hu, Andrew W. Kim, Mo Re Chen, Shufei Wang, Ziqi Keeley, Zoey C. Shin, Daniel I. Suárez Casanova, Victor M. Zhu, Yannan Martin, Lisandro Papaemmanouil, Olga Van Hooser, Stephen D. |
author_facet | García Murillo, Daniel Zhao, Yixin Rogovin, Ora S. Zhang, Kelly Hu, Andrew W. Kim, Mo Re Chen, Shufei Wang, Ziqi Keeley, Zoey C. Shin, Daniel I. Suárez Casanova, Victor M. Zhu, Yannan Martin, Lisandro Papaemmanouil, Olga Van Hooser, Stephen D. |
author_sort | García Murillo, Daniel |
collection | PubMed |
description | Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format of the raw data or the manner in which the data are organized into files. The interface is rooted in a simple vocabulary that describes common apparatus and storage devices used in neuroscience experiments. Results of analyses, and analyses of analyses, are stored as documents in a scalable, queryable database that stores the relationships and history among the experiment elements and documents. The interface allows the development of an application ecosystem where applications can focus on calculation rather than data format or organization. This tool can be used by individual labs to exchange and analyze data, and it can serve to curate neuroscience data for searchable archives. |
format | Online Article Text |
id | pubmed-8874953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Society for Neuroscience |
record_format | MEDLINE/PubMed |
spelling | pubmed-88749532022-02-25 NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments García Murillo, Daniel Zhao, Yixin Rogovin, Ora S. Zhang, Kelly Hu, Andrew W. Kim, Mo Re Chen, Shufei Wang, Ziqi Keeley, Zoey C. Shin, Daniel I. Suárez Casanova, Victor M. Zhu, Yannan Martin, Lisandro Papaemmanouil, Olga Van Hooser, Stephen D. eNeuro Research Article: Methods/New Tools Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format of the raw data or the manner in which the data are organized into files. The interface is rooted in a simple vocabulary that describes common apparatus and storage devices used in neuroscience experiments. Results of analyses, and analyses of analyses, are stored as documents in a scalable, queryable database that stores the relationships and history among the experiment elements and documents. The interface allows the development of an application ecosystem where applications can focus on calculation rather than data format or organization. This tool can be used by individual labs to exchange and analyze data, and it can serve to curate neuroscience data for searchable archives. Society for Neuroscience 2022-02-08 /pmc/articles/PMC8874953/ /pubmed/35074827 http://dx.doi.org/10.1523/ENEURO.0073-21.2022 Text en Copyright © 2022 García Murillo et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. |
spellingShingle | Research Article: Methods/New Tools García Murillo, Daniel Zhao, Yixin Rogovin, Ora S. Zhang, Kelly Hu, Andrew W. Kim, Mo Re Chen, Shufei Wang, Ziqi Keeley, Zoey C. Shin, Daniel I. Suárez Casanova, Victor M. Zhu, Yannan Martin, Lisandro Papaemmanouil, Olga Van Hooser, Stephen D. NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments |
title | NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments |
title_full | NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments |
title_fullStr | NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments |
title_full_unstemmed | NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments |
title_short | NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments |
title_sort | ndi: a platform-independent data interface and database for neuroscience physiology and imaging experiments |
topic | Research Article: Methods/New Tools |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874953/ https://www.ncbi.nlm.nih.gov/pubmed/35074827 http://dx.doi.org/10.1523/ENEURO.0073-21.2022 |
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