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NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments

Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format...

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Autores principales: García Murillo, Daniel, Zhao, Yixin, Rogovin, Ora S., Zhang, Kelly, Hu, Andrew W., Kim, Mo Re, Chen, Shufei, Wang, Ziqi, Keeley, Zoey C., Shin, Daniel I., Suárez Casanova, Victor M., Zhu, Yannan, Martin, Lisandro, Papaemmanouil, Olga, Van Hooser, Stephen D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society for Neuroscience 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874953/
https://www.ncbi.nlm.nih.gov/pubmed/35074827
http://dx.doi.org/10.1523/ENEURO.0073-21.2022
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author García Murillo, Daniel
Zhao, Yixin
Rogovin, Ora S.
Zhang, Kelly
Hu, Andrew W.
Kim, Mo Re
Chen, Shufei
Wang, Ziqi
Keeley, Zoey C.
Shin, Daniel I.
Suárez Casanova, Victor M.
Zhu, Yannan
Martin, Lisandro
Papaemmanouil, Olga
Van Hooser, Stephen D.
author_facet García Murillo, Daniel
Zhao, Yixin
Rogovin, Ora S.
Zhang, Kelly
Hu, Andrew W.
Kim, Mo Re
Chen, Shufei
Wang, Ziqi
Keeley, Zoey C.
Shin, Daniel I.
Suárez Casanova, Victor M.
Zhu, Yannan
Martin, Lisandro
Papaemmanouil, Olga
Van Hooser, Stephen D.
author_sort García Murillo, Daniel
collection PubMed
description Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format of the raw data or the manner in which the data are organized into files. The interface is rooted in a simple vocabulary that describes common apparatus and storage devices used in neuroscience experiments. Results of analyses, and analyses of analyses, are stored as documents in a scalable, queryable database that stores the relationships and history among the experiment elements and documents. The interface allows the development of an application ecosystem where applications can focus on calculation rather than data format or organization. This tool can be used by individual labs to exchange and analyze data, and it can serve to curate neuroscience data for searchable archives.
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spelling pubmed-88749532022-02-25 NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments García Murillo, Daniel Zhao, Yixin Rogovin, Ora S. Zhang, Kelly Hu, Andrew W. Kim, Mo Re Chen, Shufei Wang, Ziqi Keeley, Zoey C. Shin, Daniel I. Suárez Casanova, Victor M. Zhu, Yannan Martin, Lisandro Papaemmanouil, Olga Van Hooser, Stephen D. eNeuro Research Article: Methods/New Tools Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format of the raw data or the manner in which the data are organized into files. The interface is rooted in a simple vocabulary that describes common apparatus and storage devices used in neuroscience experiments. Results of analyses, and analyses of analyses, are stored as documents in a scalable, queryable database that stores the relationships and history among the experiment elements and documents. The interface allows the development of an application ecosystem where applications can focus on calculation rather than data format or organization. This tool can be used by individual labs to exchange and analyze data, and it can serve to curate neuroscience data for searchable archives. Society for Neuroscience 2022-02-08 /pmc/articles/PMC8874953/ /pubmed/35074827 http://dx.doi.org/10.1523/ENEURO.0073-21.2022 Text en Copyright © 2022 García Murillo et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.
spellingShingle Research Article: Methods/New Tools
García Murillo, Daniel
Zhao, Yixin
Rogovin, Ora S.
Zhang, Kelly
Hu, Andrew W.
Kim, Mo Re
Chen, Shufei
Wang, Ziqi
Keeley, Zoey C.
Shin, Daniel I.
Suárez Casanova, Victor M.
Zhu, Yannan
Martin, Lisandro
Papaemmanouil, Olga
Van Hooser, Stephen D.
NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments
title NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments
title_full NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments
title_fullStr NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments
title_full_unstemmed NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments
title_short NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments
title_sort ndi: a platform-independent data interface and database for neuroscience physiology and imaging experiments
topic Research Article: Methods/New Tools
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8874953/
https://www.ncbi.nlm.nih.gov/pubmed/35074827
http://dx.doi.org/10.1523/ENEURO.0073-21.2022
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