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Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia

MYB transcription factors (TFs) play an active role in plant responses to abiotic stresses, but they have not been systematically studied in kiwifruit (Actinidia chinensis). In this study, 181 AcMYB TFs were identified from the kiwifruit genome, unevenly distributed on 29 chromosomes. The high propo...

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Autores principales: Xia, Hui, Liu, Xinling, Lin, Zhiyi, Zhang, Xuefeng, Wu, Meijing, Wang, Tong, Deng, Honghong, Wang, Jin, Lin, Lijin, Deng, Qunxian, Lv, Xiulan, Xu, Kunfu, Liang, Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8875009/
https://www.ncbi.nlm.nih.gov/pubmed/35216440
http://dx.doi.org/10.3390/ijms23042323
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author Xia, Hui
Liu, Xinling
Lin, Zhiyi
Zhang, Xuefeng
Wu, Meijing
Wang, Tong
Deng, Honghong
Wang, Jin
Lin, Lijin
Deng, Qunxian
Lv, Xiulan
Xu, Kunfu
Liang, Dong
author_facet Xia, Hui
Liu, Xinling
Lin, Zhiyi
Zhang, Xuefeng
Wu, Meijing
Wang, Tong
Deng, Honghong
Wang, Jin
Lin, Lijin
Deng, Qunxian
Lv, Xiulan
Xu, Kunfu
Liang, Dong
author_sort Xia, Hui
collection PubMed
description MYB transcription factors (TFs) play an active role in plant responses to abiotic stresses, but they have not been systematically studied in kiwifruit (Actinidia chinensis). In this study, 181 AcMYB TFs were identified from the kiwifruit genome, unevenly distributed on 29 chromosomes. The high proportion (97.53%) of segmental duplication events (Ka/Ks values less than 1) indicated that AcMYB TFs underwent strong purification selection during evolution. According to the conservative structure, 91 AcR2R3-MYB TFs could be divided into 34 subgroups. A combination of transcriptomic data under drought and high temperature from four AcMYB TFs (AcMYB2, AcMYB60, AcMYB61 and AcMYB102) was screened out in response to stress and involvement in the phenylpropanoid pathway. They were highly correlated with the expression of genes related to lignin biosynthesis. qRT-PCR analysis showed that they were highly correlated with the expression of genes related to lignin biosynthesis in different tissues or under stress, which was consistent with the results of lignin fluorescence detection. The above results laid a foundation for further clarifying the role of MYB in stress.
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spelling pubmed-88750092022-02-26 Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia Xia, Hui Liu, Xinling Lin, Zhiyi Zhang, Xuefeng Wu, Meijing Wang, Tong Deng, Honghong Wang, Jin Lin, Lijin Deng, Qunxian Lv, Xiulan Xu, Kunfu Liang, Dong Int J Mol Sci Article MYB transcription factors (TFs) play an active role in plant responses to abiotic stresses, but they have not been systematically studied in kiwifruit (Actinidia chinensis). In this study, 181 AcMYB TFs were identified from the kiwifruit genome, unevenly distributed on 29 chromosomes. The high proportion (97.53%) of segmental duplication events (Ka/Ks values less than 1) indicated that AcMYB TFs underwent strong purification selection during evolution. According to the conservative structure, 91 AcR2R3-MYB TFs could be divided into 34 subgroups. A combination of transcriptomic data under drought and high temperature from four AcMYB TFs (AcMYB2, AcMYB60, AcMYB61 and AcMYB102) was screened out in response to stress and involvement in the phenylpropanoid pathway. They were highly correlated with the expression of genes related to lignin biosynthesis. qRT-PCR analysis showed that they were highly correlated with the expression of genes related to lignin biosynthesis in different tissues or under stress, which was consistent with the results of lignin fluorescence detection. The above results laid a foundation for further clarifying the role of MYB in stress. MDPI 2022-02-19 /pmc/articles/PMC8875009/ /pubmed/35216440 http://dx.doi.org/10.3390/ijms23042323 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xia, Hui
Liu, Xinling
Lin, Zhiyi
Zhang, Xuefeng
Wu, Meijing
Wang, Tong
Deng, Honghong
Wang, Jin
Lin, Lijin
Deng, Qunxian
Lv, Xiulan
Xu, Kunfu
Liang, Dong
Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia
title Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia
title_full Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia
title_fullStr Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia
title_full_unstemmed Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia
title_short Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia
title_sort genome-wide identification of myb transcription factors and screening of members involved in stress response in actinidia
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8875009/
https://www.ncbi.nlm.nih.gov/pubmed/35216440
http://dx.doi.org/10.3390/ijms23042323
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