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Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia
MYB transcription factors (TFs) play an active role in plant responses to abiotic stresses, but they have not been systematically studied in kiwifruit (Actinidia chinensis). In this study, 181 AcMYB TFs were identified from the kiwifruit genome, unevenly distributed on 29 chromosomes. The high propo...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8875009/ https://www.ncbi.nlm.nih.gov/pubmed/35216440 http://dx.doi.org/10.3390/ijms23042323 |
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author | Xia, Hui Liu, Xinling Lin, Zhiyi Zhang, Xuefeng Wu, Meijing Wang, Tong Deng, Honghong Wang, Jin Lin, Lijin Deng, Qunxian Lv, Xiulan Xu, Kunfu Liang, Dong |
author_facet | Xia, Hui Liu, Xinling Lin, Zhiyi Zhang, Xuefeng Wu, Meijing Wang, Tong Deng, Honghong Wang, Jin Lin, Lijin Deng, Qunxian Lv, Xiulan Xu, Kunfu Liang, Dong |
author_sort | Xia, Hui |
collection | PubMed |
description | MYB transcription factors (TFs) play an active role in plant responses to abiotic stresses, but they have not been systematically studied in kiwifruit (Actinidia chinensis). In this study, 181 AcMYB TFs were identified from the kiwifruit genome, unevenly distributed on 29 chromosomes. The high proportion (97.53%) of segmental duplication events (Ka/Ks values less than 1) indicated that AcMYB TFs underwent strong purification selection during evolution. According to the conservative structure, 91 AcR2R3-MYB TFs could be divided into 34 subgroups. A combination of transcriptomic data under drought and high temperature from four AcMYB TFs (AcMYB2, AcMYB60, AcMYB61 and AcMYB102) was screened out in response to stress and involvement in the phenylpropanoid pathway. They were highly correlated with the expression of genes related to lignin biosynthesis. qRT-PCR analysis showed that they were highly correlated with the expression of genes related to lignin biosynthesis in different tissues or under stress, which was consistent with the results of lignin fluorescence detection. The above results laid a foundation for further clarifying the role of MYB in stress. |
format | Online Article Text |
id | pubmed-8875009 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-88750092022-02-26 Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia Xia, Hui Liu, Xinling Lin, Zhiyi Zhang, Xuefeng Wu, Meijing Wang, Tong Deng, Honghong Wang, Jin Lin, Lijin Deng, Qunxian Lv, Xiulan Xu, Kunfu Liang, Dong Int J Mol Sci Article MYB transcription factors (TFs) play an active role in plant responses to abiotic stresses, but they have not been systematically studied in kiwifruit (Actinidia chinensis). In this study, 181 AcMYB TFs were identified from the kiwifruit genome, unevenly distributed on 29 chromosomes. The high proportion (97.53%) of segmental duplication events (Ka/Ks values less than 1) indicated that AcMYB TFs underwent strong purification selection during evolution. According to the conservative structure, 91 AcR2R3-MYB TFs could be divided into 34 subgroups. A combination of transcriptomic data under drought and high temperature from four AcMYB TFs (AcMYB2, AcMYB60, AcMYB61 and AcMYB102) was screened out in response to stress and involvement in the phenylpropanoid pathway. They were highly correlated with the expression of genes related to lignin biosynthesis. qRT-PCR analysis showed that they were highly correlated with the expression of genes related to lignin biosynthesis in different tissues or under stress, which was consistent with the results of lignin fluorescence detection. The above results laid a foundation for further clarifying the role of MYB in stress. MDPI 2022-02-19 /pmc/articles/PMC8875009/ /pubmed/35216440 http://dx.doi.org/10.3390/ijms23042323 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Xia, Hui Liu, Xinling Lin, Zhiyi Zhang, Xuefeng Wu, Meijing Wang, Tong Deng, Honghong Wang, Jin Lin, Lijin Deng, Qunxian Lv, Xiulan Xu, Kunfu Liang, Dong Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia |
title | Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia |
title_full | Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia |
title_fullStr | Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia |
title_full_unstemmed | Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia |
title_short | Genome-Wide Identification of MYB Transcription Factors and Screening of Members Involved in Stress Response in Actinidia |
title_sort | genome-wide identification of myb transcription factors and screening of members involved in stress response in actinidia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8875009/ https://www.ncbi.nlm.nih.gov/pubmed/35216440 http://dx.doi.org/10.3390/ijms23042323 |
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