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Thiophenes—Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors

Naturally, thiophenes represent a small family of natural metabolites featured by one to five thiophene rings. Numerous plant species belonging to the family Asteraceae commonly produce thiophenes. These metabolites possessed remarkable bioactivities, including antimicrobial, antiviral, anti-inflamm...

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Autores principales: Ibrahim, Sabrin R. M., Omar, Abdelsattar M., Bagalagel, Alaa A., Diri, Reem M., Noor, Ahmad O., Almasri, Diena M., Mohamed, Shaimaa G. A., Mohamed, Gamal A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8877444/
https://www.ncbi.nlm.nih.gov/pubmed/35214871
http://dx.doi.org/10.3390/plants11040539
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author Ibrahim, Sabrin R. M.
Omar, Abdelsattar M.
Bagalagel, Alaa A.
Diri, Reem M.
Noor, Ahmad O.
Almasri, Diena M.
Mohamed, Shaimaa G. A.
Mohamed, Gamal A.
author_facet Ibrahim, Sabrin R. M.
Omar, Abdelsattar M.
Bagalagel, Alaa A.
Diri, Reem M.
Noor, Ahmad O.
Almasri, Diena M.
Mohamed, Shaimaa G. A.
Mohamed, Gamal A.
author_sort Ibrahim, Sabrin R. M.
collection PubMed
description Naturally, thiophenes represent a small family of natural metabolites featured by one to five thiophene rings. Numerous plant species belonging to the family Asteraceae commonly produce thiophenes. These metabolites possessed remarkable bioactivities, including antimicrobial, antiviral, anti-inflammatory, larvicidal, antioxidant, insecticidal, cytotoxic, and nematicidal properties. The current review provides an update over the past seven years for the reported natural thiophene derivatives, including their sources, biosynthesis, spectral data, and bioactivities since the last review published in 2015. Additionally, with the help of the SuperPred webserver, an AI (artificial intelligence) tool, the potential drug target for the compounds was predicted. In silico studies were conducted for Cathepsin D with thiophene derivatives, including ADMET (drug absorption/distribution/metabolism/excretion/and toxicity) properties prediction, molecular docking for the binding interaction, and molecular dynamics to evaluate the ligand–target interaction stability under simulated physiological conditions.
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spelling pubmed-88774442022-02-26 Thiophenes—Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors Ibrahim, Sabrin R. M. Omar, Abdelsattar M. Bagalagel, Alaa A. Diri, Reem M. Noor, Ahmad O. Almasri, Diena M. Mohamed, Shaimaa G. A. Mohamed, Gamal A. Plants (Basel) Review Naturally, thiophenes represent a small family of natural metabolites featured by one to five thiophene rings. Numerous plant species belonging to the family Asteraceae commonly produce thiophenes. These metabolites possessed remarkable bioactivities, including antimicrobial, antiviral, anti-inflammatory, larvicidal, antioxidant, insecticidal, cytotoxic, and nematicidal properties. The current review provides an update over the past seven years for the reported natural thiophene derivatives, including their sources, biosynthesis, spectral data, and bioactivities since the last review published in 2015. Additionally, with the help of the SuperPred webserver, an AI (artificial intelligence) tool, the potential drug target for the compounds was predicted. In silico studies were conducted for Cathepsin D with thiophene derivatives, including ADMET (drug absorption/distribution/metabolism/excretion/and toxicity) properties prediction, molecular docking for the binding interaction, and molecular dynamics to evaluate the ligand–target interaction stability under simulated physiological conditions. MDPI 2022-02-17 /pmc/articles/PMC8877444/ /pubmed/35214871 http://dx.doi.org/10.3390/plants11040539 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Ibrahim, Sabrin R. M.
Omar, Abdelsattar M.
Bagalagel, Alaa A.
Diri, Reem M.
Noor, Ahmad O.
Almasri, Diena M.
Mohamed, Shaimaa G. A.
Mohamed, Gamal A.
Thiophenes—Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors
title Thiophenes—Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors
title_full Thiophenes—Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors
title_fullStr Thiophenes—Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors
title_full_unstemmed Thiophenes—Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors
title_short Thiophenes—Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors
title_sort thiophenes—naturally occurring plant metabolites: biological activities and in silico evaluation of their potential as cathepsin d inhibitors
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8877444/
https://www.ncbi.nlm.nih.gov/pubmed/35214871
http://dx.doi.org/10.3390/plants11040539
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