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Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato

In 2020, a test performance study (TPS) for the specific detection of tomato brown rugose fruit virus (ToBRFV) was organized in the frame of the H2020 Valitest project. Since no validated tests were available, all the protocols reported in the literature were at first screened, performing preliminar...

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Autores principales: Luigi, Marta, Manglli, Ariana, Tiberini, Antonio, Bertin, Sabrina, Ferretti, Luca, Taglienti, Anna, Faggioli, Francesco, Tomassoli, Laura
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8877712/
https://www.ncbi.nlm.nih.gov/pubmed/35215150
http://dx.doi.org/10.3390/pathogens11020207
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author Luigi, Marta
Manglli, Ariana
Tiberini, Antonio
Bertin, Sabrina
Ferretti, Luca
Taglienti, Anna
Faggioli, Francesco
Tomassoli, Laura
author_facet Luigi, Marta
Manglli, Ariana
Tiberini, Antonio
Bertin, Sabrina
Ferretti, Luca
Taglienti, Anna
Faggioli, Francesco
Tomassoli, Laura
author_sort Luigi, Marta
collection PubMed
description In 2020, a test performance study (TPS) for the specific detection of tomato brown rugose fruit virus (ToBRFV) was organized in the frame of the H2020 Valitest project. Since no validated tests were available, all the protocols reported in the literature were at first screened, performing preliminary studies in accordance with the EPPO standard PM 7/98 (4). Five molecular tests, two conventional RT-PCR and three real-time RT-PCR were found to be suitable and were included in the TPS. Thirty-four laboratories from 18 countries worldwide took part in TPS, receiving a panel of 22 blind samples. The panel consisted of sap belonging to symptomatic or asymptomatic leaves of Solanum lycopersicum and Capsicum annuum. The results returned by each laboratory were analyzed and diagnostic parameters were assessed for each test: reproducibility, repeatability, analytical sensitivity, diagnostic sensitivity and diagnostic specificity. All the evaluated tests resulted in being reliable in detecting ToBRFV and were included in an EPPO Standard PM 7/146—Diagnostics.
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spelling pubmed-88777122022-02-26 Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato Luigi, Marta Manglli, Ariana Tiberini, Antonio Bertin, Sabrina Ferretti, Luca Taglienti, Anna Faggioli, Francesco Tomassoli, Laura Pathogens Article In 2020, a test performance study (TPS) for the specific detection of tomato brown rugose fruit virus (ToBRFV) was organized in the frame of the H2020 Valitest project. Since no validated tests were available, all the protocols reported in the literature were at first screened, performing preliminary studies in accordance with the EPPO standard PM 7/98 (4). Five molecular tests, two conventional RT-PCR and three real-time RT-PCR were found to be suitable and were included in the TPS. Thirty-four laboratories from 18 countries worldwide took part in TPS, receiving a panel of 22 blind samples. The panel consisted of sap belonging to symptomatic or asymptomatic leaves of Solanum lycopersicum and Capsicum annuum. The results returned by each laboratory were analyzed and diagnostic parameters were assessed for each test: reproducibility, repeatability, analytical sensitivity, diagnostic sensitivity and diagnostic specificity. All the evaluated tests resulted in being reliable in detecting ToBRFV and were included in an EPPO Standard PM 7/146—Diagnostics. MDPI 2022-02-03 /pmc/articles/PMC8877712/ /pubmed/35215150 http://dx.doi.org/10.3390/pathogens11020207 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Luigi, Marta
Manglli, Ariana
Tiberini, Antonio
Bertin, Sabrina
Ferretti, Luca
Taglienti, Anna
Faggioli, Francesco
Tomassoli, Laura
Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato
title Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato
title_full Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato
title_fullStr Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato
title_full_unstemmed Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato
title_short Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato
title_sort inter-laboratory comparison of rt-pcr-based methods for the detection of tomato brown rugose fruit virus on tomato
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8877712/
https://www.ncbi.nlm.nih.gov/pubmed/35215150
http://dx.doi.org/10.3390/pathogens11020207
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