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Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes

Artificial membranes with conical pores and controllable thickness reveal ionic-transport capabilities that are superior compared with those offered by cylindrical pores. By simulating the translocation of an abstract chain-like body through a conical pore in a membrane with a variable thickness, we...

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Detalles Bibliográficos
Autores principales: Domański, Zbigniew, Grzybowski, Andrzej Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8878698/
https://www.ncbi.nlm.nih.gov/pubmed/35207060
http://dx.doi.org/10.3390/membranes12020138
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author Domański, Zbigniew
Grzybowski, Andrzej Z.
author_facet Domański, Zbigniew
Grzybowski, Andrzej Z.
author_sort Domański, Zbigniew
collection PubMed
description Artificial membranes with conical pores and controllable thickness reveal ionic-transport capabilities that are superior compared with those offered by cylindrical pores. By simulating the translocation of an abstract chain-like body through a conical pore in a membrane with a variable thickness, we formulate a statistical model of the translocation time [Formula: see text]. Our rough model encodes the biochemical details of a given real chain-like molecule as evolving sequences of the allowed chain-like body’s conformations. In our simulation experiments, we focus primarily on pore geometry and kinetic aspects of the translocation process. We study the impact of the membrane thickness L, and both conical-pore diameters [Formula: see text] on the probability distribution of [Formula: see text]. We have found that for all considered simulation setups, the randomness of [Formula: see text] is accurately described by the family of Moyal distributions while its expected value [Formula: see text] is proportional to [Formula: see text] , with [Formula: see text] being dependent on [Formula: see text].
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spelling pubmed-88786982022-02-26 Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes Domański, Zbigniew Grzybowski, Andrzej Z. Membranes (Basel) Article Artificial membranes with conical pores and controllable thickness reveal ionic-transport capabilities that are superior compared with those offered by cylindrical pores. By simulating the translocation of an abstract chain-like body through a conical pore in a membrane with a variable thickness, we formulate a statistical model of the translocation time [Formula: see text]. Our rough model encodes the biochemical details of a given real chain-like molecule as evolving sequences of the allowed chain-like body’s conformations. In our simulation experiments, we focus primarily on pore geometry and kinetic aspects of the translocation process. We study the impact of the membrane thickness L, and both conical-pore diameters [Formula: see text] on the probability distribution of [Formula: see text]. We have found that for all considered simulation setups, the randomness of [Formula: see text] is accurately described by the family of Moyal distributions while its expected value [Formula: see text] is proportional to [Formula: see text] , with [Formula: see text] being dependent on [Formula: see text]. MDPI 2022-01-24 /pmc/articles/PMC8878698/ /pubmed/35207060 http://dx.doi.org/10.3390/membranes12020138 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Domański, Zbigniew
Grzybowski, Andrzej Z.
Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes
title Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes
title_full Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes
title_fullStr Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes
title_full_unstemmed Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes
title_short Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes
title_sort simulation study of chain-like body translocation through conical pores in thick membranes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8878698/
https://www.ncbi.nlm.nih.gov/pubmed/35207060
http://dx.doi.org/10.3390/membranes12020138
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