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AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images

Pediatric medulloblastomas (MBs) are the most common type of malignant brain tumors in children. They are among the most aggressive types of tumors due to their potential for metastasis. Although this disease was initially considered a single disease, pediatric MBs can be considerably heterogeneous....

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Autores principales: Attallah, Omneya, Zaghlool, Shaza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8879027/
https://www.ncbi.nlm.nih.gov/pubmed/35207519
http://dx.doi.org/10.3390/life12020232
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author Attallah, Omneya
Zaghlool, Shaza
author_facet Attallah, Omneya
Zaghlool, Shaza
author_sort Attallah, Omneya
collection PubMed
description Pediatric medulloblastomas (MBs) are the most common type of malignant brain tumors in children. They are among the most aggressive types of tumors due to their potential for metastasis. Although this disease was initially considered a single disease, pediatric MBs can be considerably heterogeneous. Current MB classification schemes are heavily reliant on histopathology. However, the classification of MB from histopathological images is a manual process that is expensive, time-consuming, and prone to error. Previous studies have classified MB subtypes using a single feature extraction method that was based on either deep learning or textural analysis. Here, we combine textural analysis with deep learning techniques to improve subtype identification using histopathological images from two medical centers. Three state-of-the-art deep learning models were trained with textural images created from two texture analysis methods in addition to the original histopathological images, enabling the proposed pipeline to benefit from both the spatial and textural information of the images. Using a relatively small number of features, we show that our automated pipeline can yield an increase in the accuracy of classification of pediatric MB compared with previously reported methods. A refined classification of pediatric MB subgroups may provide a powerful tool for individualized therapies and identification of children with increased risk of complications.
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spelling pubmed-88790272022-02-26 AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images Attallah, Omneya Zaghlool, Shaza Life (Basel) Article Pediatric medulloblastomas (MBs) are the most common type of malignant brain tumors in children. They are among the most aggressive types of tumors due to their potential for metastasis. Although this disease was initially considered a single disease, pediatric MBs can be considerably heterogeneous. Current MB classification schemes are heavily reliant on histopathology. However, the classification of MB from histopathological images is a manual process that is expensive, time-consuming, and prone to error. Previous studies have classified MB subtypes using a single feature extraction method that was based on either deep learning or textural analysis. Here, we combine textural analysis with deep learning techniques to improve subtype identification using histopathological images from two medical centers. Three state-of-the-art deep learning models were trained with textural images created from two texture analysis methods in addition to the original histopathological images, enabling the proposed pipeline to benefit from both the spatial and textural information of the images. Using a relatively small number of features, we show that our automated pipeline can yield an increase in the accuracy of classification of pediatric MB compared with previously reported methods. A refined classification of pediatric MB subgroups may provide a powerful tool for individualized therapies and identification of children with increased risk of complications. MDPI 2022-02-03 /pmc/articles/PMC8879027/ /pubmed/35207519 http://dx.doi.org/10.3390/life12020232 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Attallah, Omneya
Zaghlool, Shaza
AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images
title AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images
title_full AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images
title_fullStr AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images
title_full_unstemmed AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images
title_short AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images
title_sort ai-based pipeline for classifying pediatric medulloblastoma using histopathological and textural images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8879027/
https://www.ncbi.nlm.nih.gov/pubmed/35207519
http://dx.doi.org/10.3390/life12020232
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