Cargando…

Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing

The microbial biogas network is complex and intertwined, and therefore relatively stable in its overall functionality. However, if key functional groups of microorganisms are affected by biotic or abiotic factors, the entire efficacy may be impaired. Bacteriophages are hypothesized to alter the stee...

Descripción completa

Detalles Bibliográficos
Autores principales:	Willenbücher, Katharina, Wibberg, Daniel, Huang, Liren, Conrady, Marius, Ramm, Patrice, Gätcke, Julia, Busche, Tobias, Brandt, Christian, Szewzyk, Ulrich, Schlüter, Andreas, Barrero Canosa, Jimena, Maus, Irena
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8879888/ https://www.ncbi.nlm.nih.gov/pubmed/35208823 http://dx.doi.org/10.3390/microorganisms10020368

Ejemplares similares

Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
por: Tshiabuila, Derek, et al.
Publicado: (2022)

Discovering novel reproductive genes in a non-model fly using de novo GridION transcriptomics
por: Walter, Mrinalini, et al.
Publicado: (2022)

Complete Genome Sequence of the Methanogen Methanoculleus bourgensis BA1 Isolated from a Biogas Reactor
por: Maus, Irena, et al.
Publicado: (2016)

Characterization of phage vB_EcoS-EE09 infecting E. coli DSM613 Isolated from Wastewater Treatment Plant Effluent and Comparative Proteomics of the Infected and Non-Infected Host
por: Barrero-Canosa, Jimena, et al.
Publicado: (2023)

Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter
por: Hassa, Julia, et al.
Publicado: (2019)

Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
por: Eikmeyer, Felix G, et al.
Publicado: (2013)

Complete Genome Sequence of the Novel Cellulolytic, Anaerobic, Thermophilic Bacterium Herbivorax saccincola Type Strain GGR1, Isolated from a Lab Scale Biogas Reactor as Established by Illumina and Nanopore MinION Sequencing
por: Pechtl, Alexander, et al.
Publicado: (2018)

The Role of Petrimonas mucosa ING2-E5A(T) in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
por: Maus, Irena, et al.
Publicado: (2020)

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
por: Bremges, Andreas, et al.
Publicado: (2015)

Complete Genome Sequence of Herbinix luporum SD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
por: Koeck, Daniela E., et al.
Publicado: (2016)

Draft Genome Sequence of Propionispora sp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
por: Koeck, Daniela E., et al.
Publicado: (2016)

Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
por: Stolze, Yvonne, et al.
Publicado: (2015)

Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
por: Stolze, Yvonne, et al.
Publicado: (2017)

Effect of a Profound Feedstock Change on the Structure and Performance of Biogas Microbiomes
por: Klang, Johanna, et al.
Publicado: (2020)

Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation
por: Martínez-Ruiz, Erika Berenice, et al.
Publicado: (2021)

Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants
por: Heyer, R., et al.
Publicado: (2019)

Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
por: Maus, Irena, et al.
Publicado: (2017)

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses
por: Allers, Elke, et al.
Publicado: (2013)

Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
por: Hassa, Julia, et al.
Publicado: (2018)

Haplotyping pharmacogenes using TLA combined with Illumina or Nanopore sequencing
por: Tilleman, Laurentijn, et al.
Publicado: (2022)

Proteiniphilum saccharofermentans str. M3/6(T) isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions
por: Tomazetto, Geizecler, et al.
Publicado: (2018)

Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
por: Maus, Irena, et al.
Publicado: (2020)

Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing
por: Wick, Ryan R., et al.
Publicado: (2023)

Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
por: Stolze, Yvonne, et al.
Publicado: (2016)

Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
por: Maus, Irena, et al.
Publicado: (2018)

Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type
por: Heyer, R., et al.
Publicado: (2016)

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)
por: McNaughton, Anna L., et al.
Publicado: (2019)

Gross Chromosomal Rearrangements in Kluyveromyces marxianus Revealed by Illumina and Oxford Nanopore Sequencing
por: Ding, Lin, et al.
Publicado: (2020)

Hybrid Nanopore-Illumina Assemblies for Five Extraintestinal Pathogenic Escherichia coli Isolates
por: Mattrasingh, D., et al.
Publicado: (2021)

Analysis of Wheat Virome in Korea Using Illumina and Oxford Nanopore Sequencing Platforms
por: Lee, Hyo-Jeong, et al.
Publicado: (2023)

Identification of plasmids in avian-associated Escherichia coli using nanopore and illumina sequencing
por: Sanderson, Haley, et al.
Publicado: (2023)

The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9(T), its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses
por: Maus, Irena, et al.
Publicado: (2022)

Optimum utilization of hub energy micro-grids with micro-networking strategy of local biogas productions
por: Jabbary, Ali, et al.
Publicado: (2023)

Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics
por: Hassa, Julia, et al.
Publicado: (2023)

Genome Sequencing of Fiber Flax Cultivar Atlant Using Oxford Nanopore and Illumina Platforms
por: Dmitriev, Alexey A., et al.
Publicado: (2021)

Benchmarking taxonomic classifiers with Illumina and Nanopore sequence data for clinical metagenomic diagnostic applications
por: Govender, Kumeren N., et al.
Publicado: (2022)

Biogas
por: Plugge, Caroline M.
Publicado: (2017)

Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota
por: Heikema, Astrid P., et al.
Publicado: (2020)

Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology
por: Lemay, Marc-André, et al.
Publicado: (2022)

Nanopore and Illumina Genome Sequencing of Fusarium oxysporum f. sp. lini Strains of Different Virulence
por: Dvorianinova, Ekaterina M., et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_0pj4peh9tfelrkeptdu6kcec78