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Identification-detection group testing protocols for COVID-19 at high prevalence

Group testing allows saving chemical reagents, analysis time, and costs, by testing pools of samples instead of individual samples. We introduce a class of group testing protocols with small dilution, suited to operate even at high prevalence (5–10[Formula: see text] ), and maximizing the fraction o...

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Autores principales: Chiani, Marco, Liva, Gianluigi, Paolini, Enrico
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8885674/
https://www.ncbi.nlm.nih.gov/pubmed/35228579
http://dx.doi.org/10.1038/s41598-022-07205-4
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author Chiani, Marco
Liva, Gianluigi
Paolini, Enrico
author_facet Chiani, Marco
Liva, Gianluigi
Paolini, Enrico
author_sort Chiani, Marco
collection PubMed
description Group testing allows saving chemical reagents, analysis time, and costs, by testing pools of samples instead of individual samples. We introduce a class of group testing protocols with small dilution, suited to operate even at high prevalence (5–10[Formula: see text] ), and maximizing the fraction of samples classified positive/negative within the first round of tests. Precisely, if the tested group has exactly one positive sample then the protocols identify it without further individual tests. The protocols also detect the presence of two or more positives in the group, in which case a second round could be applied to identify the positive individuals. With a prevalence of [Formula: see text] and maximum dilution 6, with 100 tests we classify 242 individuals, [Formula: see text] of them in one round and [Formula: see text] requiring a second individual test. In comparison, the Dorfman’s scheme can test 229 individuals with 100 tests, with a second round for [Formula: see text] of the individuals.
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spelling pubmed-88856742022-03-01 Identification-detection group testing protocols for COVID-19 at high prevalence Chiani, Marco Liva, Gianluigi Paolini, Enrico Sci Rep Article Group testing allows saving chemical reagents, analysis time, and costs, by testing pools of samples instead of individual samples. We introduce a class of group testing protocols with small dilution, suited to operate even at high prevalence (5–10[Formula: see text] ), and maximizing the fraction of samples classified positive/negative within the first round of tests. Precisely, if the tested group has exactly one positive sample then the protocols identify it without further individual tests. The protocols also detect the presence of two or more positives in the group, in which case a second round could be applied to identify the positive individuals. With a prevalence of [Formula: see text] and maximum dilution 6, with 100 tests we classify 242 individuals, [Formula: see text] of them in one round and [Formula: see text] requiring a second individual test. In comparison, the Dorfman’s scheme can test 229 individuals with 100 tests, with a second round for [Formula: see text] of the individuals. Nature Publishing Group UK 2022-02-28 /pmc/articles/PMC8885674/ /pubmed/35228579 http://dx.doi.org/10.1038/s41598-022-07205-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chiani, Marco
Liva, Gianluigi
Paolini, Enrico
Identification-detection group testing protocols for COVID-19 at high prevalence
title Identification-detection group testing protocols for COVID-19 at high prevalence
title_full Identification-detection group testing protocols for COVID-19 at high prevalence
title_fullStr Identification-detection group testing protocols for COVID-19 at high prevalence
title_full_unstemmed Identification-detection group testing protocols for COVID-19 at high prevalence
title_short Identification-detection group testing protocols for COVID-19 at high prevalence
title_sort identification-detection group testing protocols for covid-19 at high prevalence
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8885674/
https://www.ncbi.nlm.nih.gov/pubmed/35228579
http://dx.doi.org/10.1038/s41598-022-07205-4
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