Cargando…

Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA

DNA modifications are used to regulate gene expression and defend against invading genetic elements. In eukaryotes, modifications predominantly involve C5-methylcytosine (5mC) and occasionally N6-methyladenine (6mA), while bacteria frequently use N4-methylcytosine (4mC) in addition to 5mC and 6mA. H...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rodriguez, Fernando, Yushenova, Irina A., DiCorpo, Daniel, Arkhipova, Irina R.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8885841/ https://www.ncbi.nlm.nih.gov/pubmed/35228526 http://dx.doi.org/10.1038/s41467-022-28471-w

Ejemplares similares

Giant Transposons in Eukaryotes: Is Bigger Better?
por: Arkhipova, Irina R, et al.
Publicado: (2019)

Endonuclease-containing Penelope retrotransposons in the bdelloid rotifer Adineta vaga exhibit unusual structural features and play a role in expansion of host gene families
por: Arkhipova, Irina R, et al.
Publicado: (2013)

Giant Reverse Transcriptase-Encoding Transposable Elements at Telomeres
por: Arkhipova, Irina R., et al.
Publicado: (2017)

An Ancient Clade of Penelope-Like Retroelements with Permuted Domains Is Present in the Green Lineage and Protists, and Dominates Many Invertebrate Genomes
por: Craig, Rory J, et al.
Publicado: (2021)

N(6)-methyladenine: a potential epigenetic mark in eukaryotes
por: Huang, Shoujun, et al.
Publicado: (2015)

Epigenetics of Modified DNA Bases: 5-Methylcytosine and Beyond
por: Kumar, Suresh, et al.
Publicado: (2018)

Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems
por: Aravind, L, et al.
Publicado: (2013)

Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond
por: Breiling, Achim, et al.
Publicado: (2015)

A Deep Neural Network for Identifying DNA N4-Methylcytosine Sites
por: Zeng, Feng, et al.
Publicado: (2020)

4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans
por: Gaultney, Robert A, et al.
Publicado: (2020)

MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae
por: Liu, Zhao-Yu, et al.
Publicado: (2019)

Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine
por: Renciuk, Daniel, et al.
Publicado: (2013)

Discovery of a Bacterial 5-Methylcytosine Deaminase
por: Hitchcock, Daniel S., et al.
Publicado: (2014)

Recognition and cleavage of 5-methylcytosine DNA by bacterial SRA-HNH proteins
por: Han, Tiesheng, et al.
Publicado: (2015)

Systematic Analysis and Accurate Identification of DNA N4-Methylcytosine Sites by Deep Learning
por: Yu, Lezheng, et al.
Publicado: (2022)

The Methylation Game: Epigenetic and Epitranscriptomic Dynamics of 5-Methylcytosine
por: Alagia, Adele, et al.
Publicado: (2022)

Chemical and enzymatic modifications of 5-methylcytosine at the intersection of DNA damage, repair, and epigenetic reprogramming
por: Baljinnyam, Tuvshintugs, et al.
Publicado: (2022)

The dynamic RNA modification 5‐methylcytosine and its emerging role as an epitranscriptomic mark
por: Trixl, Lukas, et al.
Publicado: (2018)

Empirical Comparison and Analysis of Web-Based DNA N(4)-Methylcytosine Site Prediction Tools
por: Manavalan, Balachandran, et al.
Publicado: (2020)

Comparative evaluation and analysis of DNA N4-methylcytosine methylation sites using deep learning
por: Ju, Hong, et al.
Publicado: (2023)

Genomic impact of eukaryotic transposable elements
por: Arkhipova, Irina R, et al.
Publicado: (2012)

A cyclobutane thymine–N(4)-methylcytosine dimer is resistant to hydrolysis but strongly blocks DNA synthesis
por: Yamamoto, Junpei, et al.
Publicado: (2014)

Epigenetic TET-Catalyzed Oxidative Products of 5-Methylcytosine Impede Z-DNA Formation of CG Decamers
por: Vongsutilers, Vorasit, et al.
Publicado: (2020)

Modified Nucleotides for Discrimination between Cytosine and the Epigenetic Marker 5‐Methylcytosine
por: von Watzdorf, Janina, et al.
Publicado: (2016)

Hyb4mC: a hybrid DNA2vec-based model for DNA N4-methylcytosine sites prediction
por: Liang, Ying, et al.
Publicado: (2022)

4mCpred-EL: An Ensemble Learning Framework for Identification of DNA N(4)-Methylcytosine Sites in the Mouse Genome
por: Manavalan, Balachandran, et al.
Publicado: (2019)

A distinct class of eukaryotic MT-A70 methyltransferases maintain symmetric DNA N(6)-adenine methylation at the ApT dinucleotides as an epigenetic mark associated with transcription
por: Wang, Yuanyuan, et al.
Publicado: (2019)

DNA methylation: an epigenetic mark of cellular memory
por: Kim, Mirang, et al.
Publicado: (2017)

Accurate prediction of DNA N(4)-methylcytosine sites via boost-learning various types of sequence features
por: Zhao, Zhixun, et al.
Publicado: (2020)

DNA sequences performs as natural language processing by exploiting deep learning algorithm for the identification of N4-methylcytosine
por: Wahab, Abdul, et al.
Publicado: (2021)

DNA cytosine and methylcytosine deamination by APOBEC3B: enhancing methylcytosine deamination by engineering APOBEC3B
por: Fu, Yang, et al.
Publicado: (2015)

Eukaryotic 5-methylcytosine (m(5)C) RNA Methyltransferases: Mechanisms, Cellular Functions, and Links to Disease
por: Bohnsack, Katherine E., et al.
Publicado: (2019)

Base-resolution detection of N(4)-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing
por: Yu, Miao, et al.
Publicado: (2015)

4mCPred-CNN—Prediction of DNA N4-Methylcytosine in the Mouse Genome Using a Convolutional Neural Network
por: Abbas, Zeeshan, et al.
Publicado: (2021)

i4mC-EL: Identifying DNA N4-Methylcytosine Sites in the Mouse Genome Using Ensemble Learning
por: Li, Yanjuan, et al.
Publicado: (2021)

5′-methylcytosine and 5′-hydroxymethylcytosine Each Provide Epigenetic Information to the Mouse Zygote
por: Li, Yan, et al.
Publicado: (2013)

MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing
por: Ye, Pohao, et al.
Publicado: (2017)

Developing a Multi-Layer Deep Learning Based Predictive Model to Identify DNA N4-Methylcytosine Modifications
por: Zeng, Rao, et al.
Publicado: (2020)

Sensitivity and specificity of immunoprecipitation of DNA containing 5-Methylcytosine
por: Okitsu, Cindy Y, et al.
Publicado: (2015)

Variable presence of 5-methylcytosine in commercial RNA and DNA
por: Schmid, Katharina, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_3b1sfhiub0fk479akkpsqra2k4