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Deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction
Machine learning has been applied to neuroimaging data for estimating brain age and capturing early cognitive impairment in neurodegenerative diseases. Blood parameters like neurofilament light chain are associated with aging. In order to improve brain age predictive accuracy, we constructed a model...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8886664/ https://www.ncbi.nlm.nih.gov/pubmed/34913545 http://dx.doi.org/10.1002/hbm.25748 |
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author | Ren, Bingyu Wu, Yingtong Huang, Liumei Zhang, Zhiguo Huang, Bingsheng Zhang, Huajie Ma, Jinting Li, Bing Liu, Xukun Wu, Guangyao Zhang, Jian Shen, Liming Liu, Qiong Ni, Jiazuan |
author_facet | Ren, Bingyu Wu, Yingtong Huang, Liumei Zhang, Zhiguo Huang, Bingsheng Zhang, Huajie Ma, Jinting Li, Bing Liu, Xukun Wu, Guangyao Zhang, Jian Shen, Liming Liu, Qiong Ni, Jiazuan |
author_sort | Ren, Bingyu |
collection | PubMed |
description | Machine learning has been applied to neuroimaging data for estimating brain age and capturing early cognitive impairment in neurodegenerative diseases. Blood parameters like neurofilament light chain are associated with aging. In order to improve brain age predictive accuracy, we constructed a model based on both brain structural magnetic resonance imaging (sMRI) and blood parameters. Healthy subjects (n = 93; 37 males; aged 50–85 years) were recruited. A deep learning network was firstly pretrained on a large set of MRI scans (n = 1,481; 659 males; aged 50–85 years) downloaded from multiple open‐source datasets, to provide weights on our recruited dataset. Evaluating the network on the recruited dataset resulted in mean absolute error (MAE) of 4.91 years and a high correlation (r = .67, p <.001) against chronological age. The sMRI data were then combined with five blood biochemical indicators including GLU, TG, TC, ApoA1 and ApoB, and 9 dementia‐associated biomarkers including ApoE genotype, HCY, NFL, TREM2, Aβ40, Aβ42, T‐tau, TIMP1, and VLDLR to construct a bilinear fusion model, which achieved a more accurate prediction of brain age (MAE, 3.96 years; r = .76, p <.001). Notably, the fusion model achieved better improvement in the group of older subjects (70–85 years). Extracted attention maps of the network showed that amygdala, pallidum, and olfactory were effective for age estimation. Mediation analysis further showed that brain structural features and blood parameters provided independent and significant impact. The constructed age prediction model may have promising potential in evaluation of brain health based on MRI and blood parameters. |
format | Online Article Text |
id | pubmed-8886664 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88866642022-03-04 Deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction Ren, Bingyu Wu, Yingtong Huang, Liumei Zhang, Zhiguo Huang, Bingsheng Zhang, Huajie Ma, Jinting Li, Bing Liu, Xukun Wu, Guangyao Zhang, Jian Shen, Liming Liu, Qiong Ni, Jiazuan Hum Brain Mapp Research Articles Machine learning has been applied to neuroimaging data for estimating brain age and capturing early cognitive impairment in neurodegenerative diseases. Blood parameters like neurofilament light chain are associated with aging. In order to improve brain age predictive accuracy, we constructed a model based on both brain structural magnetic resonance imaging (sMRI) and blood parameters. Healthy subjects (n = 93; 37 males; aged 50–85 years) were recruited. A deep learning network was firstly pretrained on a large set of MRI scans (n = 1,481; 659 males; aged 50–85 years) downloaded from multiple open‐source datasets, to provide weights on our recruited dataset. Evaluating the network on the recruited dataset resulted in mean absolute error (MAE) of 4.91 years and a high correlation (r = .67, p <.001) against chronological age. The sMRI data were then combined with five blood biochemical indicators including GLU, TG, TC, ApoA1 and ApoB, and 9 dementia‐associated biomarkers including ApoE genotype, HCY, NFL, TREM2, Aβ40, Aβ42, T‐tau, TIMP1, and VLDLR to construct a bilinear fusion model, which achieved a more accurate prediction of brain age (MAE, 3.96 years; r = .76, p <.001). Notably, the fusion model achieved better improvement in the group of older subjects (70–85 years). Extracted attention maps of the network showed that amygdala, pallidum, and olfactory were effective for age estimation. Mediation analysis further showed that brain structural features and blood parameters provided independent and significant impact. The constructed age prediction model may have promising potential in evaluation of brain health based on MRI and blood parameters. John Wiley & Sons, Inc. 2021-12-16 /pmc/articles/PMC8886664/ /pubmed/34913545 http://dx.doi.org/10.1002/hbm.25748 Text en © 2021 The Authors. Human Brain Mapping published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Ren, Bingyu Wu, Yingtong Huang, Liumei Zhang, Zhiguo Huang, Bingsheng Zhang, Huajie Ma, Jinting Li, Bing Liu, Xukun Wu, Guangyao Zhang, Jian Shen, Liming Liu, Qiong Ni, Jiazuan Deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction |
title | Deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction |
title_full | Deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction |
title_fullStr | Deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction |
title_full_unstemmed | Deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction |
title_short | Deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction |
title_sort | deep transfer learning of structural magnetic resonance imaging fused with blood parameters improves brain age prediction |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8886664/ https://www.ncbi.nlm.nih.gov/pubmed/34913545 http://dx.doi.org/10.1002/hbm.25748 |
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