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Metabolomics on the study of marine organisms
BACKGROUND: Marine ecosystems are hosts to a vast array of organisms, being among the most richly biodiverse locations on the planet. The study of these ecosystems is very important, as they are not only a significant source of food for the world but also have, in recent years, become a prolific sou...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8891194/ https://www.ncbi.nlm.nih.gov/pubmed/35235054 http://dx.doi.org/10.1007/s11306-022-01874-y |
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author | Bayona, Lina M. de Voogd, Nicole J. Choi, Young Hae |
author_facet | Bayona, Lina M. de Voogd, Nicole J. Choi, Young Hae |
author_sort | Bayona, Lina M. |
collection | PubMed |
description | BACKGROUND: Marine ecosystems are hosts to a vast array of organisms, being among the most richly biodiverse locations on the planet. The study of these ecosystems is very important, as they are not only a significant source of food for the world but also have, in recent years, become a prolific source of compounds with therapeutic potential. Studies of aspects of marine life have involved diverse fields of marine science, and the use of metabolomics as an experimental approach has increased in recent years. As part of the “omics” technologies, metabolomics has been used to deepen the understanding of interactions between marine organisms and their environment at a metabolic level and to discover new metabolites produced by these organisms. AIM OF REVIEW: This review provides an overview of the use of metabolomics in the study of marine organisms. It also explores the use of metabolomics tools common to other fields such as plants and human metabolomics that could potentially contribute to marine organism studies. It deals with the entire process of a metabolomic study, from sample collection considerations, metabolite extraction, analytical techniques, and data analysis. It also includes an overview of recent applications of metabolomics in fields such as marine ecology and drug discovery and future perspectives of its use in the study of marine organisms. KEY SCIENTIFIC CONCEPTS OF REVIEW: The review covers all the steps involved in metabolomic studies of marine organisms including, collection, extraction methods, analytical tools, statistical analysis, and dereplication. It aims to provide insight into all aspects that a newcomer to the field should consider when undertaking marine metabolomics. |
format | Online Article Text |
id | pubmed-8891194 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-88911942022-03-08 Metabolomics on the study of marine organisms Bayona, Lina M. de Voogd, Nicole J. Choi, Young Hae Metabolomics Review Article BACKGROUND: Marine ecosystems are hosts to a vast array of organisms, being among the most richly biodiverse locations on the planet. The study of these ecosystems is very important, as they are not only a significant source of food for the world but also have, in recent years, become a prolific source of compounds with therapeutic potential. Studies of aspects of marine life have involved diverse fields of marine science, and the use of metabolomics as an experimental approach has increased in recent years. As part of the “omics” technologies, metabolomics has been used to deepen the understanding of interactions between marine organisms and their environment at a metabolic level and to discover new metabolites produced by these organisms. AIM OF REVIEW: This review provides an overview of the use of metabolomics in the study of marine organisms. It also explores the use of metabolomics tools common to other fields such as plants and human metabolomics that could potentially contribute to marine organism studies. It deals with the entire process of a metabolomic study, from sample collection considerations, metabolite extraction, analytical techniques, and data analysis. It also includes an overview of recent applications of metabolomics in fields such as marine ecology and drug discovery and future perspectives of its use in the study of marine organisms. KEY SCIENTIFIC CONCEPTS OF REVIEW: The review covers all the steps involved in metabolomic studies of marine organisms including, collection, extraction methods, analytical tools, statistical analysis, and dereplication. It aims to provide insight into all aspects that a newcomer to the field should consider when undertaking marine metabolomics. Springer US 2022-03-02 2022 /pmc/articles/PMC8891194/ /pubmed/35235054 http://dx.doi.org/10.1007/s11306-022-01874-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Review Article Bayona, Lina M. de Voogd, Nicole J. Choi, Young Hae Metabolomics on the study of marine organisms |
title | Metabolomics on the study of marine organisms |
title_full | Metabolomics on the study of marine organisms |
title_fullStr | Metabolomics on the study of marine organisms |
title_full_unstemmed | Metabolomics on the study of marine organisms |
title_short | Metabolomics on the study of marine organisms |
title_sort | metabolomics on the study of marine organisms |
topic | Review Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8891194/ https://www.ncbi.nlm.nih.gov/pubmed/35235054 http://dx.doi.org/10.1007/s11306-022-01874-y |
work_keys_str_mv | AT bayonalinam metabolomicsonthestudyofmarineorganisms AT devoogdnicolej metabolomicsonthestudyofmarineorganisms AT choiyounghae metabolomicsonthestudyofmarineorganisms |