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Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer
Tumour immune regulation has attracted widespread attention, and long noncoding RNAs (lncRNAs) play an important role in this process. Therefore, we evaluated patient prognosis by exploring the relationship between bladder cancer (BLCA) and immune-related lncRNAs (IRlncRNAs). Transcriptome data and...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8891323/ https://www.ncbi.nlm.nih.gov/pubmed/35236887 http://dx.doi.org/10.1038/s41598-022-07286-1 |
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author | Ren, Wenjing Zuo, Siyu Yang, Liang Tu, Renyuan Wang, Ping Zhang, Xiling |
author_facet | Ren, Wenjing Zuo, Siyu Yang, Liang Tu, Renyuan Wang, Ping Zhang, Xiling |
author_sort | Ren, Wenjing |
collection | PubMed |
description | Tumour immune regulation has attracted widespread attention, and long noncoding RNAs (lncRNAs) play an important role in this process. Therefore, we evaluated patient prognosis by exploring the relationship between bladder cancer (BLCA) and immune-related lncRNAs (IRlncRNAs). Transcriptome data and immune-related genes were analysed for coexpression, and then, the IRlncRNAs were analysed to determine the differentially expressed IRlncRNAs (DEIRlncRNAs) between normal and tumour samples in The Cancer Genome Atlas. The screened lncRNAs were pairwise paired and combined with clinical data, and finally, a signature was constructed by Lasso regression and Cox regression in 13 pairs of DEIRlncRNAs. According to the Akaike information criterion (AIC) values of the 1-year receiver operating characteristic curve, BLCA patients were stratified into high- or low-risk groups. The high-risk group had a worse prognosis. A comprehensive analysis showed that differences in risk scores were associated with the immune status of BLCA-infiltrated patients. The identified signature was correlated with the expression of immune checkpoint inhibitor-related molecules and sensitivity to chemotherapeutic drugs. We also identified three BLCA clusters with different immune statuses and prognoses that are also associated with immunotherapy response and drug sensitivity. In conclusion, we constructed a powerful predictive signature with high accuracy and validated its prognostic value. |
format | Online Article Text |
id | pubmed-8891323 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-88913232022-03-03 Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer Ren, Wenjing Zuo, Siyu Yang, Liang Tu, Renyuan Wang, Ping Zhang, Xiling Sci Rep Article Tumour immune regulation has attracted widespread attention, and long noncoding RNAs (lncRNAs) play an important role in this process. Therefore, we evaluated patient prognosis by exploring the relationship between bladder cancer (BLCA) and immune-related lncRNAs (IRlncRNAs). Transcriptome data and immune-related genes were analysed for coexpression, and then, the IRlncRNAs were analysed to determine the differentially expressed IRlncRNAs (DEIRlncRNAs) between normal and tumour samples in The Cancer Genome Atlas. The screened lncRNAs were pairwise paired and combined with clinical data, and finally, a signature was constructed by Lasso regression and Cox regression in 13 pairs of DEIRlncRNAs. According to the Akaike information criterion (AIC) values of the 1-year receiver operating characteristic curve, BLCA patients were stratified into high- or low-risk groups. The high-risk group had a worse prognosis. A comprehensive analysis showed that differences in risk scores were associated with the immune status of BLCA-infiltrated patients. The identified signature was correlated with the expression of immune checkpoint inhibitor-related molecules and sensitivity to chemotherapeutic drugs. We also identified three BLCA clusters with different immune statuses and prognoses that are also associated with immunotherapy response and drug sensitivity. In conclusion, we constructed a powerful predictive signature with high accuracy and validated its prognostic value. Nature Publishing Group UK 2022-03-02 /pmc/articles/PMC8891323/ /pubmed/35236887 http://dx.doi.org/10.1038/s41598-022-07286-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ren, Wenjing Zuo, Siyu Yang, Liang Tu, Renyuan Wang, Ping Zhang, Xiling Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer |
title | Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer |
title_full | Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer |
title_fullStr | Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer |
title_full_unstemmed | Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer |
title_short | Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer |
title_sort | identification of a novel immune-related long noncoding rna signature to predict the prognosis of bladder cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8891323/ https://www.ncbi.nlm.nih.gov/pubmed/35236887 http://dx.doi.org/10.1038/s41598-022-07286-1 |
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