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Modeling energy depletion in rat livers using Nash equilibrium metabolic pathway analysis

The current gold standard of Static Cold Storage (SCS), which is static cold storage on ice (about + 4 °C) in a specialized media such as the University of Wisconsin solution (UW), limits storage to few hours for vascular and metabolically active tissues such as the liver and the heart. The liver is...

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Autores principales: Lucia, Angelo, Ferrarese, Emily, Uygun, Korkut
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8894355/
https://www.ncbi.nlm.nih.gov/pubmed/35241684
http://dx.doi.org/10.1038/s41598-022-06966-2
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author Lucia, Angelo
Ferrarese, Emily
Uygun, Korkut
author_facet Lucia, Angelo
Ferrarese, Emily
Uygun, Korkut
author_sort Lucia, Angelo
collection PubMed
description The current gold standard of Static Cold Storage (SCS), which is static cold storage on ice (about + 4 °C) in a specialized media such as the University of Wisconsin solution (UW), limits storage to few hours for vascular and metabolically active tissues such as the liver and the heart. The liver is arguably the pinnacle of metabolism in human body and therefore metabolic pathway analysis immediately becomes very relevant. In this article, a Nash Equilibrium (NE) approach, which is a first principles approach, is used to model and simulate the static cold storage and warm ischemia of a proposed model of liver cells. Simulations of energy depletion in the liver in static cold storage measured by ATP content and energy charge are presented along with comparisons to experimental data. In addition, conversion of Nash Equilibrium iterations to time are described along with an uncertainty analysis for the parameters in the model. Results in this work show that the Nash Equilibrium approach provides a good match to experimental data for energy depletion and that the uncertainty in model parameters is very small with percent variances less than 0.1%.
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spelling pubmed-88943552022-03-07 Modeling energy depletion in rat livers using Nash equilibrium metabolic pathway analysis Lucia, Angelo Ferrarese, Emily Uygun, Korkut Sci Rep Article The current gold standard of Static Cold Storage (SCS), which is static cold storage on ice (about + 4 °C) in a specialized media such as the University of Wisconsin solution (UW), limits storage to few hours for vascular and metabolically active tissues such as the liver and the heart. The liver is arguably the pinnacle of metabolism in human body and therefore metabolic pathway analysis immediately becomes very relevant. In this article, a Nash Equilibrium (NE) approach, which is a first principles approach, is used to model and simulate the static cold storage and warm ischemia of a proposed model of liver cells. Simulations of energy depletion in the liver in static cold storage measured by ATP content and energy charge are presented along with comparisons to experimental data. In addition, conversion of Nash Equilibrium iterations to time are described along with an uncertainty analysis for the parameters in the model. Results in this work show that the Nash Equilibrium approach provides a good match to experimental data for energy depletion and that the uncertainty in model parameters is very small with percent variances less than 0.1%. Nature Publishing Group UK 2022-03-03 /pmc/articles/PMC8894355/ /pubmed/35241684 http://dx.doi.org/10.1038/s41598-022-06966-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lucia, Angelo
Ferrarese, Emily
Uygun, Korkut
Modeling energy depletion in rat livers using Nash equilibrium metabolic pathway analysis
title Modeling energy depletion in rat livers using Nash equilibrium metabolic pathway analysis
title_full Modeling energy depletion in rat livers using Nash equilibrium metabolic pathway analysis
title_fullStr Modeling energy depletion in rat livers using Nash equilibrium metabolic pathway analysis
title_full_unstemmed Modeling energy depletion in rat livers using Nash equilibrium metabolic pathway analysis
title_short Modeling energy depletion in rat livers using Nash equilibrium metabolic pathway analysis
title_sort modeling energy depletion in rat livers using nash equilibrium metabolic pathway analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8894355/
https://www.ncbi.nlm.nih.gov/pubmed/35241684
http://dx.doi.org/10.1038/s41598-022-06966-2
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