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Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system

BACKGROUND: Due to comparatively long measurement times in simultaneous positron emission tomography and magnetic resonance (PET/MR) imaging, patient movement during the measurement can be challenging. This leads to artifacts which have a negative impact on the visual assessment and quantitative val...

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Autores principales: Einspänner, Eric, Jochimsen, Thies H., Harries, Johanna, Melzer, Andreas, Unger, Michael, Brown, Richard, Thielemans, Kris, Sabri, Osama, Sattler, Bernhard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8894542/
https://www.ncbi.nlm.nih.gov/pubmed/35239047
http://dx.doi.org/10.1186/s40658-022-00442-6
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author Einspänner, Eric
Jochimsen, Thies H.
Harries, Johanna
Melzer, Andreas
Unger, Michael
Brown, Richard
Thielemans, Kris
Sabri, Osama
Sattler, Bernhard
author_facet Einspänner, Eric
Jochimsen, Thies H.
Harries, Johanna
Melzer, Andreas
Unger, Michael
Brown, Richard
Thielemans, Kris
Sabri, Osama
Sattler, Bernhard
author_sort Einspänner, Eric
collection PubMed
description BACKGROUND: Due to comparatively long measurement times in simultaneous positron emission tomography and magnetic resonance (PET/MR) imaging, patient movement during the measurement can be challenging. This leads to artifacts which have a negative impact on the visual assessment and quantitative validity of the image data and, in the worst case, can lead to misinterpretations. Simultaneous PET/MR systems allow the MR-based registration of movements and enable correction of the PET data. To assess the effectiveness of motion correction methods, it is necessary to carry out measurements on phantoms that are moved in a reproducible way. This study explores the possibility of using such a phantom-based setup to evaluate motion correction strategies in PET/MR of the human head. METHOD: An MR-compatible robotic system was used to generate rigid movements of a head-like phantom. Different tools, either from the manufacturer or open-source software, were used to estimate and correct for motion based on the PET data itself (SIRF with SPM and NiftyReg) and MR data acquired simultaneously (e.g. MCLFIRT, BrainCompass). Different motion estimates were compared using data acquired during robot-induced motion. The effectiveness of motion correction of PET data was evaluated by determining the segmented volume of an activity-filled flask inside the phantom. In addition, the segmented volume was used to determine the centre-of-mass and the change in maximum activity concentration. RESULTS: The results showed a volume increase between 2.7 and 36.3% could be induced by the experimental setup depending on the motion pattern. Both, BrainCompass and MCFLIRT, produced corrected PET images, by reducing the volume increase to 0.7–4.7% (BrainCompass) and to -2.8–0.4% (MCFLIRT). The same was observed for example for the centre-of-mass, where the results show that MCFLIRT (0.2–0.6 mm after motion correction) had a smaller deviation from the reference position than BrainCompass (0.5–1.8 mm) for all displacements. CONCLUSIONS: The experimental setup is suitable for the reproducible generation of movement patterns. Using open-source software for motion correction is a viable alternative to the vendor-provided motion-correction software. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40658-022-00442-6.
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spelling pubmed-88945422022-03-08 Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system Einspänner, Eric Jochimsen, Thies H. Harries, Johanna Melzer, Andreas Unger, Michael Brown, Richard Thielemans, Kris Sabri, Osama Sattler, Bernhard EJNMMI Phys Original Research BACKGROUND: Due to comparatively long measurement times in simultaneous positron emission tomography and magnetic resonance (PET/MR) imaging, patient movement during the measurement can be challenging. This leads to artifacts which have a negative impact on the visual assessment and quantitative validity of the image data and, in the worst case, can lead to misinterpretations. Simultaneous PET/MR systems allow the MR-based registration of movements and enable correction of the PET data. To assess the effectiveness of motion correction methods, it is necessary to carry out measurements on phantoms that are moved in a reproducible way. This study explores the possibility of using such a phantom-based setup to evaluate motion correction strategies in PET/MR of the human head. METHOD: An MR-compatible robotic system was used to generate rigid movements of a head-like phantom. Different tools, either from the manufacturer or open-source software, were used to estimate and correct for motion based on the PET data itself (SIRF with SPM and NiftyReg) and MR data acquired simultaneously (e.g. MCLFIRT, BrainCompass). Different motion estimates were compared using data acquired during robot-induced motion. The effectiveness of motion correction of PET data was evaluated by determining the segmented volume of an activity-filled flask inside the phantom. In addition, the segmented volume was used to determine the centre-of-mass and the change in maximum activity concentration. RESULTS: The results showed a volume increase between 2.7 and 36.3% could be induced by the experimental setup depending on the motion pattern. Both, BrainCompass and MCFLIRT, produced corrected PET images, by reducing the volume increase to 0.7–4.7% (BrainCompass) and to -2.8–0.4% (MCFLIRT). The same was observed for example for the centre-of-mass, where the results show that MCFLIRT (0.2–0.6 mm after motion correction) had a smaller deviation from the reference position than BrainCompass (0.5–1.8 mm) for all displacements. CONCLUSIONS: The experimental setup is suitable for the reproducible generation of movement patterns. Using open-source software for motion correction is a viable alternative to the vendor-provided motion-correction software. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40658-022-00442-6. Springer International Publishing 2022-03-03 /pmc/articles/PMC8894542/ /pubmed/35239047 http://dx.doi.org/10.1186/s40658-022-00442-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Research
Einspänner, Eric
Jochimsen, Thies H.
Harries, Johanna
Melzer, Andreas
Unger, Michael
Brown, Richard
Thielemans, Kris
Sabri, Osama
Sattler, Bernhard
Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system
title Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system
title_full Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system
title_fullStr Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system
title_full_unstemmed Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system
title_short Evaluating different methods of MR-based motion correction in simultaneous PET/MR using a head phantom moved by a robotic system
title_sort evaluating different methods of mr-based motion correction in simultaneous pet/mr using a head phantom moved by a robotic system
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8894542/
https://www.ncbi.nlm.nih.gov/pubmed/35239047
http://dx.doi.org/10.1186/s40658-022-00442-6
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