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The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal

Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal, a tropical plant from Bromeliaceae family, has immense applications, especially for fiber production of excellent quality. The lack of available chloroplast (cp) genome information limits its breeding and application. Here, we assembl...

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Detalles Bibliográficos
Autores principales: Liu, Chaoyang, Zhang, Wei, He, Yehua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8896190/
https://www.ncbi.nlm.nih.gov/pubmed/35252578
http://dx.doi.org/10.1080/23802359.2022.2039081
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author Liu, Chaoyang
Zhang, Wei
He, Yehua
author_facet Liu, Chaoyang
Zhang, Wei
He, Yehua
author_sort Liu, Chaoyang
collection PubMed
description Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal, a tropical plant from Bromeliaceae family, has immense applications, especially for fiber production of excellent quality. The lack of available chloroplast (cp) genome information limits its breeding and application. Here, we assembled its complete cp genome using Illumina high-throughput sequencing technology. The cp genome size is 159,983 bp, with 37.4% GC content, including a large single copy region (LSC) of 87,787 bp, a small single copy region (SSC) of 18,606 bp, and a pair of inverted repeat regions (IRs) of 26,795 bp. It encodes 89 protein-coding, 38 tRNA and 8 rRNA genes. Phylogenetic analysis showed that A. comosus var. erectifolius was close to Ananas comosus. The complete cp genome sequences could provide valuable information for variety breeding and genetic analysis of agronomic and economic traits in A. comosus var. erectifolius.
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spelling pubmed-88961902022-03-05 The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal Liu, Chaoyang Zhang, Wei He, Yehua Mitochondrial DNA B Resour Mitogenome Announcement Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal, a tropical plant from Bromeliaceae family, has immense applications, especially for fiber production of excellent quality. The lack of available chloroplast (cp) genome information limits its breeding and application. Here, we assembled its complete cp genome using Illumina high-throughput sequencing technology. The cp genome size is 159,983 bp, with 37.4% GC content, including a large single copy region (LSC) of 87,787 bp, a small single copy region (SSC) of 18,606 bp, and a pair of inverted repeat regions (IRs) of 26,795 bp. It encodes 89 protein-coding, 38 tRNA and 8 rRNA genes. Phylogenetic analysis showed that A. comosus var. erectifolius was close to Ananas comosus. The complete cp genome sequences could provide valuable information for variety breeding and genetic analysis of agronomic and economic traits in A. comosus var. erectifolius. Taylor & Francis 2022-03-02 /pmc/articles/PMC8896190/ /pubmed/35252578 http://dx.doi.org/10.1080/23802359.2022.2039081 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Chaoyang
Zhang, Wei
He, Yehua
The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal
title The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal
title_full The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal
title_fullStr The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal
title_full_unstemmed The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal
title_short The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal
title_sort complete chloroplast genome of ananas comosus var. erectifolius (l.b. smith) coppens & leal
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8896190/
https://www.ncbi.nlm.nih.gov/pubmed/35252578
http://dx.doi.org/10.1080/23802359.2022.2039081
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