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The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal
Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal, a tropical plant from Bromeliaceae family, has immense applications, especially for fiber production of excellent quality. The lack of available chloroplast (cp) genome information limits its breeding and application. Here, we assembl...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8896190/ https://www.ncbi.nlm.nih.gov/pubmed/35252578 http://dx.doi.org/10.1080/23802359.2022.2039081 |
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author | Liu, Chaoyang Zhang, Wei He, Yehua |
author_facet | Liu, Chaoyang Zhang, Wei He, Yehua |
author_sort | Liu, Chaoyang |
collection | PubMed |
description | Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal, a tropical plant from Bromeliaceae family, has immense applications, especially for fiber production of excellent quality. The lack of available chloroplast (cp) genome information limits its breeding and application. Here, we assembled its complete cp genome using Illumina high-throughput sequencing technology. The cp genome size is 159,983 bp, with 37.4% GC content, including a large single copy region (LSC) of 87,787 bp, a small single copy region (SSC) of 18,606 bp, and a pair of inverted repeat regions (IRs) of 26,795 bp. It encodes 89 protein-coding, 38 tRNA and 8 rRNA genes. Phylogenetic analysis showed that A. comosus var. erectifolius was close to Ananas comosus. The complete cp genome sequences could provide valuable information for variety breeding and genetic analysis of agronomic and economic traits in A. comosus var. erectifolius. |
format | Online Article Text |
id | pubmed-8896190 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88961902022-03-05 The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal Liu, Chaoyang Zhang, Wei He, Yehua Mitochondrial DNA B Resour Mitogenome Announcement Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal, a tropical plant from Bromeliaceae family, has immense applications, especially for fiber production of excellent quality. The lack of available chloroplast (cp) genome information limits its breeding and application. Here, we assembled its complete cp genome using Illumina high-throughput sequencing technology. The cp genome size is 159,983 bp, with 37.4% GC content, including a large single copy region (LSC) of 87,787 bp, a small single copy region (SSC) of 18,606 bp, and a pair of inverted repeat regions (IRs) of 26,795 bp. It encodes 89 protein-coding, 38 tRNA and 8 rRNA genes. Phylogenetic analysis showed that A. comosus var. erectifolius was close to Ananas comosus. The complete cp genome sequences could provide valuable information for variety breeding and genetic analysis of agronomic and economic traits in A. comosus var. erectifolius. Taylor & Francis 2022-03-02 /pmc/articles/PMC8896190/ /pubmed/35252578 http://dx.doi.org/10.1080/23802359.2022.2039081 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Chaoyang Zhang, Wei He, Yehua The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal |
title | The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal |
title_full | The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal |
title_fullStr | The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal |
title_full_unstemmed | The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal |
title_short | The complete chloroplast genome of Ananas comosus var. erectifolius (L.B. Smith) Coppens & Leal |
title_sort | complete chloroplast genome of ananas comosus var. erectifolius (l.b. smith) coppens & leal |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8896190/ https://www.ncbi.nlm.nih.gov/pubmed/35252578 http://dx.doi.org/10.1080/23802359.2022.2039081 |
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