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HOMELETTE: a unified interface to homology modelling software
SUMMARY: Homology modelling, the technique of generating models of 3D protein structures based on experimental structures from related proteins, has become increasingly popular over the years. An abundance of different tools for model generation and model evaluation is available from various researc...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8896651/ https://www.ncbi.nlm.nih.gov/pubmed/34954790 http://dx.doi.org/10.1093/bioinformatics/btab866 |
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author | Junk, Philipp Kiel, Christina |
author_facet | Junk, Philipp Kiel, Christina |
author_sort | Junk, Philipp |
collection | PubMed |
description | SUMMARY: Homology modelling, the technique of generating models of 3D protein structures based on experimental structures from related proteins, has become increasingly popular over the years. An abundance of different tools for model generation and model evaluation is available from various research groups. We present HOMELETTE, an interface which implements a unified programmatic access to these tools. This allows for the assemble of custom pipelines from pre- or self-implemented building blocks. AVAILABILITY AND IMPLEMENTATION: HOMELETTE is implemented in Python, compatible with version 3.6 and newer. It is distributed under the MIT license. Documentation and tutorials are available at Read the Docs (https://homelette.readthedocs.io/). The latest version of HOMELETTE is available on PyPI (https://pypi.org/project/homelette/) and GitHub (https://github.com/PhilippJunk/homelette). A full installation of the latest version of HOMELETTE with all dependencies is also available as a Docker container (https://hub.docker.com/r/philippjunk/homelette_template). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-8896651 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-88966512022-03-07 HOMELETTE: a unified interface to homology modelling software Junk, Philipp Kiel, Christina Bioinformatics Applications Notes SUMMARY: Homology modelling, the technique of generating models of 3D protein structures based on experimental structures from related proteins, has become increasingly popular over the years. An abundance of different tools for model generation and model evaluation is available from various research groups. We present HOMELETTE, an interface which implements a unified programmatic access to these tools. This allows for the assemble of custom pipelines from pre- or self-implemented building blocks. AVAILABILITY AND IMPLEMENTATION: HOMELETTE is implemented in Python, compatible with version 3.6 and newer. It is distributed under the MIT license. Documentation and tutorials are available at Read the Docs (https://homelette.readthedocs.io/). The latest version of HOMELETTE is available on PyPI (https://pypi.org/project/homelette/) and GitHub (https://github.com/PhilippJunk/homelette). A full installation of the latest version of HOMELETTE with all dependencies is also available as a Docker container (https://hub.docker.com/r/philippjunk/homelette_template). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2021-12-25 /pmc/articles/PMC8896651/ /pubmed/34954790 http://dx.doi.org/10.1093/bioinformatics/btab866 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Junk, Philipp Kiel, Christina HOMELETTE: a unified interface to homology modelling software |
title | HOMELETTE: a unified interface to homology modelling software |
title_full | HOMELETTE: a unified interface to homology modelling software |
title_fullStr | HOMELETTE: a unified interface to homology modelling software |
title_full_unstemmed | HOMELETTE: a unified interface to homology modelling software |
title_short | HOMELETTE: a unified interface to homology modelling software |
title_sort | homelette: a unified interface to homology modelling software |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8896651/ https://www.ncbi.nlm.nih.gov/pubmed/34954790 http://dx.doi.org/10.1093/bioinformatics/btab866 |
work_keys_str_mv | AT junkphilipp homeletteaunifiedinterfacetohomologymodellingsoftware AT kielchristina homeletteaunifiedinterfacetohomologymodellingsoftware |