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HOMELETTE: a unified interface to homology modelling software

SUMMARY: Homology modelling, the technique of generating models of 3D protein structures based on experimental structures from related proteins, has become increasingly popular over the years. An abundance of different tools for model generation and model evaluation is available from various researc...

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Detalles Bibliográficos
Autores principales: Junk, Philipp, Kiel, Christina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8896651/
https://www.ncbi.nlm.nih.gov/pubmed/34954790
http://dx.doi.org/10.1093/bioinformatics/btab866
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author Junk, Philipp
Kiel, Christina
author_facet Junk, Philipp
Kiel, Christina
author_sort Junk, Philipp
collection PubMed
description SUMMARY: Homology modelling, the technique of generating models of 3D protein structures based on experimental structures from related proteins, has become increasingly popular over the years. An abundance of different tools for model generation and model evaluation is available from various research groups. We present HOMELETTE, an interface which implements a unified programmatic access to these tools. This allows for the assemble of custom pipelines from pre- or self-implemented building blocks. AVAILABILITY AND IMPLEMENTATION: HOMELETTE is implemented in Python, compatible with version 3.6 and newer. It is distributed under the MIT license. Documentation and tutorials are available at Read the Docs (https://homelette.readthedocs.io/). The latest version of HOMELETTE is available on PyPI (https://pypi.org/project/homelette/) and GitHub (https://github.com/PhilippJunk/homelette). A full installation of the latest version of HOMELETTE with all dependencies is also available as a Docker container (https://hub.docker.com/r/philippjunk/homelette_template). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-88966512022-03-07 HOMELETTE: a unified interface to homology modelling software Junk, Philipp Kiel, Christina Bioinformatics Applications Notes SUMMARY: Homology modelling, the technique of generating models of 3D protein structures based on experimental structures from related proteins, has become increasingly popular over the years. An abundance of different tools for model generation and model evaluation is available from various research groups. We present HOMELETTE, an interface which implements a unified programmatic access to these tools. This allows for the assemble of custom pipelines from pre- or self-implemented building blocks. AVAILABILITY AND IMPLEMENTATION: HOMELETTE is implemented in Python, compatible with version 3.6 and newer. It is distributed under the MIT license. Documentation and tutorials are available at Read the Docs (https://homelette.readthedocs.io/). The latest version of HOMELETTE is available on PyPI (https://pypi.org/project/homelette/) and GitHub (https://github.com/PhilippJunk/homelette). A full installation of the latest version of HOMELETTE with all dependencies is also available as a Docker container (https://hub.docker.com/r/philippjunk/homelette_template). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2021-12-25 /pmc/articles/PMC8896651/ /pubmed/34954790 http://dx.doi.org/10.1093/bioinformatics/btab866 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Junk, Philipp
Kiel, Christina
HOMELETTE: a unified interface to homology modelling software
title HOMELETTE: a unified interface to homology modelling software
title_full HOMELETTE: a unified interface to homology modelling software
title_fullStr HOMELETTE: a unified interface to homology modelling software
title_full_unstemmed HOMELETTE: a unified interface to homology modelling software
title_short HOMELETTE: a unified interface to homology modelling software
title_sort homelette: a unified interface to homology modelling software
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8896651/
https://www.ncbi.nlm.nih.gov/pubmed/34954790
http://dx.doi.org/10.1093/bioinformatics/btab866
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