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SDC: An integrated database for sex differences in cancer
Sex differences are evident in the incidence and mortality of diverse cancers. With the development of personalized approaches in cancer treatment, the impact of sex differences has not been systematically incorporated into preclinical and clinical cancer research. The molecular mechanisms underlyin...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8897669/ https://www.ncbi.nlm.nih.gov/pubmed/35284049 http://dx.doi.org/10.1016/j.csbj.2022.02.023 |
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author | Zhao, Long-Fei Zhang, Jin-Ge Qi, Feng-Yu Hou, Wei-Yan Li, Yin-Rui Shen, Dan-Dan Zhao, Li-Juan Qi, Lin Liu, Hong-Min Zheng, Yi-Chao |
author_facet | Zhao, Long-Fei Zhang, Jin-Ge Qi, Feng-Yu Hou, Wei-Yan Li, Yin-Rui Shen, Dan-Dan Zhao, Li-Juan Qi, Lin Liu, Hong-Min Zheng, Yi-Chao |
author_sort | Zhao, Long-Fei |
collection | PubMed |
description | Sex differences are evident in the incidence and mortality of diverse cancers. With the development of personalized approaches in cancer treatment, the impact of sex differences has not been systematically incorporated into preclinical and clinical cancer research. The molecular mechanisms underlying sex differences in cancer have not been elucidated. Here, we developed the first database of Sex Differences in Cancer (SDC), a web-based public database that integrates resources from multiple databases, including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project (GTEx), UCSC Xena, Broad Institute Cancer Cell Line Encyclopedia (CCLE), Genomics of Drug Sensitivity in Cancer (GDSC). SDC contains 27 types of cancers, 6 types of molecular data, more than 10,000 donors, 977 cancer cell lines were used to analyze sex differences among cancers. It provides five main modules: Survival and phenotype, Molecular differences, Signatures and pathways, Therapy response, Download. Users can download the all the visualized results and raw data after analysis. Collectively, SDC is the first integrated database to analyze sex differences in cancer on the web server, which will strengthen our understanding of the role of sex in cancers. It is implemented in Shiny-server and freely available for public use at http://sdc.anticancer.xyz. |
format | Online Article Text |
id | pubmed-8897669 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-88976692022-03-11 SDC: An integrated database for sex differences in cancer Zhao, Long-Fei Zhang, Jin-Ge Qi, Feng-Yu Hou, Wei-Yan Li, Yin-Rui Shen, Dan-Dan Zhao, Li-Juan Qi, Lin Liu, Hong-Min Zheng, Yi-Chao Comput Struct Biotechnol J Data Article Sex differences are evident in the incidence and mortality of diverse cancers. With the development of personalized approaches in cancer treatment, the impact of sex differences has not been systematically incorporated into preclinical and clinical cancer research. The molecular mechanisms underlying sex differences in cancer have not been elucidated. Here, we developed the first database of Sex Differences in Cancer (SDC), a web-based public database that integrates resources from multiple databases, including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project (GTEx), UCSC Xena, Broad Institute Cancer Cell Line Encyclopedia (CCLE), Genomics of Drug Sensitivity in Cancer (GDSC). SDC contains 27 types of cancers, 6 types of molecular data, more than 10,000 donors, 977 cancer cell lines were used to analyze sex differences among cancers. It provides five main modules: Survival and phenotype, Molecular differences, Signatures and pathways, Therapy response, Download. Users can download the all the visualized results and raw data after analysis. Collectively, SDC is the first integrated database to analyze sex differences in cancer on the web server, which will strengthen our understanding of the role of sex in cancers. It is implemented in Shiny-server and freely available for public use at http://sdc.anticancer.xyz. Research Network of Computational and Structural Biotechnology 2022-02-26 /pmc/articles/PMC8897669/ /pubmed/35284049 http://dx.doi.org/10.1016/j.csbj.2022.02.023 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data Article Zhao, Long-Fei Zhang, Jin-Ge Qi, Feng-Yu Hou, Wei-Yan Li, Yin-Rui Shen, Dan-Dan Zhao, Li-Juan Qi, Lin Liu, Hong-Min Zheng, Yi-Chao SDC: An integrated database for sex differences in cancer |
title | SDC: An integrated database for sex differences in cancer |
title_full | SDC: An integrated database for sex differences in cancer |
title_fullStr | SDC: An integrated database for sex differences in cancer |
title_full_unstemmed | SDC: An integrated database for sex differences in cancer |
title_short | SDC: An integrated database for sex differences in cancer |
title_sort | sdc: an integrated database for sex differences in cancer |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8897669/ https://www.ncbi.nlm.nih.gov/pubmed/35284049 http://dx.doi.org/10.1016/j.csbj.2022.02.023 |
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