Cargando…

SDC: An integrated database for sex differences in cancer

Sex differences are evident in the incidence and mortality of diverse cancers. With the development of personalized approaches in cancer treatment, the impact of sex differences has not been systematically incorporated into preclinical and clinical cancer research. The molecular mechanisms underlyin...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhao, Long-Fei, Zhang, Jin-Ge, Qi, Feng-Yu, Hou, Wei-Yan, Li, Yin-Rui, Shen, Dan-Dan, Zhao, Li-Juan, Qi, Lin, Liu, Hong-Min, Zheng, Yi-Chao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8897669/
https://www.ncbi.nlm.nih.gov/pubmed/35284049
http://dx.doi.org/10.1016/j.csbj.2022.02.023
_version_ 1784663475720552448
author Zhao, Long-Fei
Zhang, Jin-Ge
Qi, Feng-Yu
Hou, Wei-Yan
Li, Yin-Rui
Shen, Dan-Dan
Zhao, Li-Juan
Qi, Lin
Liu, Hong-Min
Zheng, Yi-Chao
author_facet Zhao, Long-Fei
Zhang, Jin-Ge
Qi, Feng-Yu
Hou, Wei-Yan
Li, Yin-Rui
Shen, Dan-Dan
Zhao, Li-Juan
Qi, Lin
Liu, Hong-Min
Zheng, Yi-Chao
author_sort Zhao, Long-Fei
collection PubMed
description Sex differences are evident in the incidence and mortality of diverse cancers. With the development of personalized approaches in cancer treatment, the impact of sex differences has not been systematically incorporated into preclinical and clinical cancer research. The molecular mechanisms underlying sex differences in cancer have not been elucidated. Here, we developed the first database of Sex Differences in Cancer (SDC), a web-based public database that integrates resources from multiple databases, including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project (GTEx), UCSC Xena, Broad Institute Cancer Cell Line Encyclopedia (CCLE), Genomics of Drug Sensitivity in Cancer (GDSC). SDC contains 27 types of cancers, 6 types of molecular data, more than 10,000 donors, 977 cancer cell lines were used to analyze sex differences among cancers. It provides five main modules: Survival and phenotype, Molecular differences, Signatures and pathways, Therapy response, Download. Users can download the all the visualized results and raw data after analysis. Collectively, SDC is the first integrated database to analyze sex differences in cancer on the web server, which will strengthen our understanding of the role of sex in cancers. It is implemented in Shiny-server and freely available for public use at http://sdc.anticancer.xyz.
format Online
Article
Text
id pubmed-8897669
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Research Network of Computational and Structural Biotechnology
record_format MEDLINE/PubMed
spelling pubmed-88976692022-03-11 SDC: An integrated database for sex differences in cancer Zhao, Long-Fei Zhang, Jin-Ge Qi, Feng-Yu Hou, Wei-Yan Li, Yin-Rui Shen, Dan-Dan Zhao, Li-Juan Qi, Lin Liu, Hong-Min Zheng, Yi-Chao Comput Struct Biotechnol J Data Article Sex differences are evident in the incidence and mortality of diverse cancers. With the development of personalized approaches in cancer treatment, the impact of sex differences has not been systematically incorporated into preclinical and clinical cancer research. The molecular mechanisms underlying sex differences in cancer have not been elucidated. Here, we developed the first database of Sex Differences in Cancer (SDC), a web-based public database that integrates resources from multiple databases, including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project (GTEx), UCSC Xena, Broad Institute Cancer Cell Line Encyclopedia (CCLE), Genomics of Drug Sensitivity in Cancer (GDSC). SDC contains 27 types of cancers, 6 types of molecular data, more than 10,000 donors, 977 cancer cell lines were used to analyze sex differences among cancers. It provides five main modules: Survival and phenotype, Molecular differences, Signatures and pathways, Therapy response, Download. Users can download the all the visualized results and raw data after analysis. Collectively, SDC is the first integrated database to analyze sex differences in cancer on the web server, which will strengthen our understanding of the role of sex in cancers. It is implemented in Shiny-server and freely available for public use at http://sdc.anticancer.xyz. Research Network of Computational and Structural Biotechnology 2022-02-26 /pmc/articles/PMC8897669/ /pubmed/35284049 http://dx.doi.org/10.1016/j.csbj.2022.02.023 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Zhao, Long-Fei
Zhang, Jin-Ge
Qi, Feng-Yu
Hou, Wei-Yan
Li, Yin-Rui
Shen, Dan-Dan
Zhao, Li-Juan
Qi, Lin
Liu, Hong-Min
Zheng, Yi-Chao
SDC: An integrated database for sex differences in cancer
title SDC: An integrated database for sex differences in cancer
title_full SDC: An integrated database for sex differences in cancer
title_fullStr SDC: An integrated database for sex differences in cancer
title_full_unstemmed SDC: An integrated database for sex differences in cancer
title_short SDC: An integrated database for sex differences in cancer
title_sort sdc: an integrated database for sex differences in cancer
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8897669/
https://www.ncbi.nlm.nih.gov/pubmed/35284049
http://dx.doi.org/10.1016/j.csbj.2022.02.023
work_keys_str_mv AT zhaolongfei sdcanintegrateddatabaseforsexdifferencesincancer
AT zhangjinge sdcanintegrateddatabaseforsexdifferencesincancer
AT qifengyu sdcanintegrateddatabaseforsexdifferencesincancer
AT houweiyan sdcanintegrateddatabaseforsexdifferencesincancer
AT liyinrui sdcanintegrateddatabaseforsexdifferencesincancer
AT shendandan sdcanintegrateddatabaseforsexdifferencesincancer
AT zhaolijuan sdcanintegrateddatabaseforsexdifferencesincancer
AT qilin sdcanintegrateddatabaseforsexdifferencesincancer
AT liuhongmin sdcanintegrateddatabaseforsexdifferencesincancer
AT zhengyichao sdcanintegrateddatabaseforsexdifferencesincancer