Cargando…
DNTTIP1 is a Prognostic Biomarker Correlated With Immune Infiltrates in Hepatocellular Carcinoma: A Study Based on The Cancer Genome Atlas Data
Deoxynucleotidyltransferase terminal-interacting protein 1 (DNTTIP1) is involved in the deacetylation of p53 in regulating cell cycle and is associated with cancers at the molecular level. In this study, we evaluated the prognostic value in hepatocellular carcinoma (HCC) based on data from The Cance...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8899818/ https://www.ncbi.nlm.nih.gov/pubmed/35265097 http://dx.doi.org/10.3389/fgene.2021.767834 |
_version_ | 1784663991908302848 |
---|---|
author | Zhu, Changyu Tong, Rongsheng Jiang, Xiaolei Xiao, Hua Guan, Jianmei Shu, Jianchen |
author_facet | Zhu, Changyu Tong, Rongsheng Jiang, Xiaolei Xiao, Hua Guan, Jianmei Shu, Jianchen |
author_sort | Zhu, Changyu |
collection | PubMed |
description | Deoxynucleotidyltransferase terminal-interacting protein 1 (DNTTIP1) is involved in the deacetylation of p53 in regulating cell cycle and is associated with cancers at the molecular level. In this study, we evaluated the prognostic value in hepatocellular carcinoma (HCC) based on data from The Cancer Genome Atlas (TCGA) database. Kruskal–Wallis test, Wilcoxon signed-rank test, and logistic regression were used to evaluate the relationship between DNTTIP1 expression and clinicopathological features. Cox regression and the Kaplan–Meier method were adopted to evaluate prognosis-related factors. Gene set enrichment analysis (GSEA) was performed to identify the key pathways related to DNTTIP1. The correlations between DNTTIP1 and cancer immune infiltrates were investigated by single-sample Gene Set Enrichment Analysis (ssGSEA). DNTTIP1 was found to be upregulated with amplification in tumor tissues in multiple HCC cohorts. High DNTTIP1 expression was associated with poorer overall survival (OS) and disease-free survival (DFS). GSEA suggested that DNTTIP1 regulates the cell cycle mitotic, G1/S, and G2/M phases and Fc fragment of IgE receptor I (FCERI)–mediated NF-κB and MAPK pathway and Fc fragment of IgG receptor (FCGR) activation pathways. Notably, ssGSEA indicated that DNTTIP1 expression was positively correlated with infiltrating levels of Th2 cells, Tfh, NK CD56 bright cells, aDCs, T helper cells, Th1 cells, and macrophages. These findings suggest that DNTTIP1 is correlated with prognosis and immune infiltration in HCC, which lays a foundation for further study of the immune-regulatory role of DNTTIP1 in HCC. |
format | Online Article Text |
id | pubmed-8899818 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88998182022-03-08 DNTTIP1 is a Prognostic Biomarker Correlated With Immune Infiltrates in Hepatocellular Carcinoma: A Study Based on The Cancer Genome Atlas Data Zhu, Changyu Tong, Rongsheng Jiang, Xiaolei Xiao, Hua Guan, Jianmei Shu, Jianchen Front Genet Genetics Deoxynucleotidyltransferase terminal-interacting protein 1 (DNTTIP1) is involved in the deacetylation of p53 in regulating cell cycle and is associated with cancers at the molecular level. In this study, we evaluated the prognostic value in hepatocellular carcinoma (HCC) based on data from The Cancer Genome Atlas (TCGA) database. Kruskal–Wallis test, Wilcoxon signed-rank test, and logistic regression were used to evaluate the relationship between DNTTIP1 expression and clinicopathological features. Cox regression and the Kaplan–Meier method were adopted to evaluate prognosis-related factors. Gene set enrichment analysis (GSEA) was performed to identify the key pathways related to DNTTIP1. The correlations between DNTTIP1 and cancer immune infiltrates were investigated by single-sample Gene Set Enrichment Analysis (ssGSEA). DNTTIP1 was found to be upregulated with amplification in tumor tissues in multiple HCC cohorts. High DNTTIP1 expression was associated with poorer overall survival (OS) and disease-free survival (DFS). GSEA suggested that DNTTIP1 regulates the cell cycle mitotic, G1/S, and G2/M phases and Fc fragment of IgE receptor I (FCERI)–mediated NF-κB and MAPK pathway and Fc fragment of IgG receptor (FCGR) activation pathways. Notably, ssGSEA indicated that DNTTIP1 expression was positively correlated with infiltrating levels of Th2 cells, Tfh, NK CD56 bright cells, aDCs, T helper cells, Th1 cells, and macrophages. These findings suggest that DNTTIP1 is correlated with prognosis and immune infiltration in HCC, which lays a foundation for further study of the immune-regulatory role of DNTTIP1 in HCC. Frontiers Media S.A. 2022-02-21 /pmc/articles/PMC8899818/ /pubmed/35265097 http://dx.doi.org/10.3389/fgene.2021.767834 Text en Copyright © 2022 Zhu, Tong, Jiang, Xiao, Guan and Shu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Zhu, Changyu Tong, Rongsheng Jiang, Xiaolei Xiao, Hua Guan, Jianmei Shu, Jianchen DNTTIP1 is a Prognostic Biomarker Correlated With Immune Infiltrates in Hepatocellular Carcinoma: A Study Based on The Cancer Genome Atlas Data |
title | DNTTIP1 is a Prognostic Biomarker Correlated With Immune Infiltrates in Hepatocellular Carcinoma: A Study Based on The Cancer Genome Atlas Data |
title_full | DNTTIP1 is a Prognostic Biomarker Correlated With Immune Infiltrates in Hepatocellular Carcinoma: A Study Based on The Cancer Genome Atlas Data |
title_fullStr | DNTTIP1 is a Prognostic Biomarker Correlated With Immune Infiltrates in Hepatocellular Carcinoma: A Study Based on The Cancer Genome Atlas Data |
title_full_unstemmed | DNTTIP1 is a Prognostic Biomarker Correlated With Immune Infiltrates in Hepatocellular Carcinoma: A Study Based on The Cancer Genome Atlas Data |
title_short | DNTTIP1 is a Prognostic Biomarker Correlated With Immune Infiltrates in Hepatocellular Carcinoma: A Study Based on The Cancer Genome Atlas Data |
title_sort | dnttip1 is a prognostic biomarker correlated with immune infiltrates in hepatocellular carcinoma: a study based on the cancer genome atlas data |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8899818/ https://www.ncbi.nlm.nih.gov/pubmed/35265097 http://dx.doi.org/10.3389/fgene.2021.767834 |
work_keys_str_mv | AT zhuchangyu dnttip1isaprognosticbiomarkercorrelatedwithimmuneinfiltratesinhepatocellularcarcinomaastudybasedonthecancergenomeatlasdata AT tongrongsheng dnttip1isaprognosticbiomarkercorrelatedwithimmuneinfiltratesinhepatocellularcarcinomaastudybasedonthecancergenomeatlasdata AT jiangxiaolei dnttip1isaprognosticbiomarkercorrelatedwithimmuneinfiltratesinhepatocellularcarcinomaastudybasedonthecancergenomeatlasdata AT xiaohua dnttip1isaprognosticbiomarkercorrelatedwithimmuneinfiltratesinhepatocellularcarcinomaastudybasedonthecancergenomeatlasdata AT guanjianmei dnttip1isaprognosticbiomarkercorrelatedwithimmuneinfiltratesinhepatocellularcarcinomaastudybasedonthecancergenomeatlasdata AT shujianchen dnttip1isaprognosticbiomarkercorrelatedwithimmuneinfiltratesinhepatocellularcarcinomaastudybasedonthecancergenomeatlasdata |