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Disclosing the Role of C4-Oxo Substitution in the Photochemistry of DNA and RNA Pyrimidine Monomers: Formation of Photoproducts from the Vibrationally Excited Ground State
[Image: see text] Oxo and amino substituted purines and pyrimidines have been suggested as protonucleobases participating in ancient pre-RNA forms. Considering electromagnetic radiation as a key environmental selection pressure on early Earth, the investigation of the photophysics of modified nucleo...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8900130/ https://www.ncbi.nlm.nih.gov/pubmed/35191712 http://dx.doi.org/10.1021/acs.jpclett.2c00052 |
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author | Vos, Eva Hoehn, Sean J. Krul, Sarah E. Crespo-Hernández, Carlos E. González-Vázquez, Jesús Corral, Inés |
author_facet | Vos, Eva Hoehn, Sean J. Krul, Sarah E. Crespo-Hernández, Carlos E. González-Vázquez, Jesús Corral, Inés |
author_sort | Vos, Eva |
collection | PubMed |
description | [Image: see text] Oxo and amino substituted purines and pyrimidines have been suggested as protonucleobases participating in ancient pre-RNA forms. Considering electromagnetic radiation as a key environmental selection pressure on early Earth, the investigation of the photophysics of modified nucleobases is crucial to determine their viability as nucleobases’ ancestors and to understand the factors that rule the photostability of natural nucleobases. In this Letter, we combine femtosecond transient absorption spectroscopy and quantum mechanical simulations to reveal the photochemistry of 4-pyrimidinone, a close relative of uracil. Irradiation of 4-pyrimidinone with ultraviolet radiation populates the S(1)(ππ*) state, which decays to the vibrationally excited ground state in a few hundred femtoseconds. Analysis of the postirradiated sample in water reveals the formation of a 6-hydroxy-5H-photohydrate and 3-(N-(iminomethyl)imino)propanoic acid as the primary photoproducts. 3-(N-(Iminomethyl)imino)propanoic acid originates from the hydrolysis of an unstable ketene species generated from the C4–N3 photofragmentation of the pyrimidine core. |
format | Online Article Text |
id | pubmed-8900130 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-89001302022-03-08 Disclosing the Role of C4-Oxo Substitution in the Photochemistry of DNA and RNA Pyrimidine Monomers: Formation of Photoproducts from the Vibrationally Excited Ground State Vos, Eva Hoehn, Sean J. Krul, Sarah E. Crespo-Hernández, Carlos E. González-Vázquez, Jesús Corral, Inés J Phys Chem Lett [Image: see text] Oxo and amino substituted purines and pyrimidines have been suggested as protonucleobases participating in ancient pre-RNA forms. Considering electromagnetic radiation as a key environmental selection pressure on early Earth, the investigation of the photophysics of modified nucleobases is crucial to determine their viability as nucleobases’ ancestors and to understand the factors that rule the photostability of natural nucleobases. In this Letter, we combine femtosecond transient absorption spectroscopy and quantum mechanical simulations to reveal the photochemistry of 4-pyrimidinone, a close relative of uracil. Irradiation of 4-pyrimidinone with ultraviolet radiation populates the S(1)(ππ*) state, which decays to the vibrationally excited ground state in a few hundred femtoseconds. Analysis of the postirradiated sample in water reveals the formation of a 6-hydroxy-5H-photohydrate and 3-(N-(iminomethyl)imino)propanoic acid as the primary photoproducts. 3-(N-(Iminomethyl)imino)propanoic acid originates from the hydrolysis of an unstable ketene species generated from the C4–N3 photofragmentation of the pyrimidine core. American Chemical Society 2022-02-22 2022-03-03 /pmc/articles/PMC8900130/ /pubmed/35191712 http://dx.doi.org/10.1021/acs.jpclett.2c00052 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Vos, Eva Hoehn, Sean J. Krul, Sarah E. Crespo-Hernández, Carlos E. González-Vázquez, Jesús Corral, Inés Disclosing the Role of C4-Oxo Substitution in the Photochemistry of DNA and RNA Pyrimidine Monomers: Formation of Photoproducts from the Vibrationally Excited Ground State |
title | Disclosing the Role of C4-Oxo Substitution in the
Photochemistry of DNA and RNA Pyrimidine Monomers: Formation of Photoproducts
from the Vibrationally Excited Ground State |
title_full | Disclosing the Role of C4-Oxo Substitution in the
Photochemistry of DNA and RNA Pyrimidine Monomers: Formation of Photoproducts
from the Vibrationally Excited Ground State |
title_fullStr | Disclosing the Role of C4-Oxo Substitution in the
Photochemistry of DNA and RNA Pyrimidine Monomers: Formation of Photoproducts
from the Vibrationally Excited Ground State |
title_full_unstemmed | Disclosing the Role of C4-Oxo Substitution in the
Photochemistry of DNA and RNA Pyrimidine Monomers: Formation of Photoproducts
from the Vibrationally Excited Ground State |
title_short | Disclosing the Role of C4-Oxo Substitution in the
Photochemistry of DNA and RNA Pyrimidine Monomers: Formation of Photoproducts
from the Vibrationally Excited Ground State |
title_sort | disclosing the role of c4-oxo substitution in the
photochemistry of dna and rna pyrimidine monomers: formation of photoproducts
from the vibrationally excited ground state |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8900130/ https://www.ncbi.nlm.nih.gov/pubmed/35191712 http://dx.doi.org/10.1021/acs.jpclett.2c00052 |
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