Cargando…
Identification of Biomarkers Related to Regulatory T Cell Infiltration in Oral Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis
BACKGROUND: Oral squamous cell carcinoma (OSCC) is one of the most prevalent malignancies worldwide. More recently, the administration of immune checkpoint inhibitors has opened up more possibilities for cancer treatment. METHODS: We utilized a weighted gene co-expression network and the single samp...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8900811/ https://www.ncbi.nlm.nih.gov/pubmed/35264874 http://dx.doi.org/10.2147/IJGM.S349379 |
_version_ | 1784664208190734336 |
---|---|
author | Wang, Chao Chen, Zhihong Yang, Xueming Zhang, Wei Zhou, Junbo Zhang, Hongchuang Ding, Xu Ye, Jinhai Wu, Heming Wu, Yunong Zheng, Yang Song, Xiaomeng |
author_facet | Wang, Chao Chen, Zhihong Yang, Xueming Zhang, Wei Zhou, Junbo Zhang, Hongchuang Ding, Xu Ye, Jinhai Wu, Heming Wu, Yunong Zheng, Yang Song, Xiaomeng |
author_sort | Wang, Chao |
collection | PubMed |
description | BACKGROUND: Oral squamous cell carcinoma (OSCC) is one of the most prevalent malignancies worldwide. More recently, the administration of immune checkpoint inhibitors has opened up more possibilities for cancer treatment. METHODS: We utilized a weighted gene co-expression network and the single sample gene set enrichment analysis (ssGSEA) algorithm in the TCGA database and identified a module highly correlated with regulatory T cell (Treg) abundance in OSCC. Subsequently, we verified the results by tissue microarrays and utilized immunohistochemical staining (IHC) to test the relationship between the expression level and clinicopathological staging. CCK-8, transwell, and wound healing assays were utilized to detect the functions of OSCC cells. RESULTS: LCK, IL10RA, and TNFRSF1B were selected as biomarkers related to regulatory T cell infiltration. IHC staining showed significantly increased expression of LCK, IL10RA or TNFRSF1B in OSCC patients, and the expression levels were associated with tumor stage, lymph node metastasis, pathological stage, clinical status and the overall survival. In vitro experiments showed that LCK, IL10RA or TNFRSF1B knockdown efficiently impaired the proliferative, migrative, and invasive capacity in OSCC cell lines. CONCLUSION: We performed a series of bioinformatics analyses in OSCC and identified three oncogenic indicators: LCK, IL10RA, TNFRSF1B. These findings uncovered the potential prognostic values of hub genes, thus laying foundations for in-depth research in OSCC. |
format | Online Article Text |
id | pubmed-8900811 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-89008112022-03-08 Identification of Biomarkers Related to Regulatory T Cell Infiltration in Oral Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis Wang, Chao Chen, Zhihong Yang, Xueming Zhang, Wei Zhou, Junbo Zhang, Hongchuang Ding, Xu Ye, Jinhai Wu, Heming Wu, Yunong Zheng, Yang Song, Xiaomeng Int J Gen Med Original Research BACKGROUND: Oral squamous cell carcinoma (OSCC) is one of the most prevalent malignancies worldwide. More recently, the administration of immune checkpoint inhibitors has opened up more possibilities for cancer treatment. METHODS: We utilized a weighted gene co-expression network and the single sample gene set enrichment analysis (ssGSEA) algorithm in the TCGA database and identified a module highly correlated with regulatory T cell (Treg) abundance in OSCC. Subsequently, we verified the results by tissue microarrays and utilized immunohistochemical staining (IHC) to test the relationship between the expression level and clinicopathological staging. CCK-8, transwell, and wound healing assays were utilized to detect the functions of OSCC cells. RESULTS: LCK, IL10RA, and TNFRSF1B were selected as biomarkers related to regulatory T cell infiltration. IHC staining showed significantly increased expression of LCK, IL10RA or TNFRSF1B in OSCC patients, and the expression levels were associated with tumor stage, lymph node metastasis, pathological stage, clinical status and the overall survival. In vitro experiments showed that LCK, IL10RA or TNFRSF1B knockdown efficiently impaired the proliferative, migrative, and invasive capacity in OSCC cell lines. CONCLUSION: We performed a series of bioinformatics analyses in OSCC and identified three oncogenic indicators: LCK, IL10RA, TNFRSF1B. These findings uncovered the potential prognostic values of hub genes, thus laying foundations for in-depth research in OSCC. Dove 2022-03-02 /pmc/articles/PMC8900811/ /pubmed/35264874 http://dx.doi.org/10.2147/IJGM.S349379 Text en © 2022 Wang et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Wang, Chao Chen, Zhihong Yang, Xueming Zhang, Wei Zhou, Junbo Zhang, Hongchuang Ding, Xu Ye, Jinhai Wu, Heming Wu, Yunong Zheng, Yang Song, Xiaomeng Identification of Biomarkers Related to Regulatory T Cell Infiltration in Oral Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis |
title | Identification of Biomarkers Related to Regulatory T Cell Infiltration in Oral Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis |
title_full | Identification of Biomarkers Related to Regulatory T Cell Infiltration in Oral Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis |
title_fullStr | Identification of Biomarkers Related to Regulatory T Cell Infiltration in Oral Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis |
title_full_unstemmed | Identification of Biomarkers Related to Regulatory T Cell Infiltration in Oral Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis |
title_short | Identification of Biomarkers Related to Regulatory T Cell Infiltration in Oral Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis |
title_sort | identification of biomarkers related to regulatory t cell infiltration in oral squamous cell carcinoma based on integrated bioinformatics analysis |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8900811/ https://www.ncbi.nlm.nih.gov/pubmed/35264874 http://dx.doi.org/10.2147/IJGM.S349379 |
work_keys_str_mv | AT wangchao identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT chenzhihong identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT yangxueming identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT zhangwei identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT zhoujunbo identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT zhanghongchuang identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT dingxu identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT yejinhai identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT wuheming identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT wuyunong identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT zhengyang identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis AT songxiaomeng identificationofbiomarkersrelatedtoregulatorytcellinfiltrationinoralsquamouscellcarcinomabasedonintegratedbioinformaticsanalysis |