Cargando…

Preliminary report on harmonization of features extraction process using the ComBat tool in the multi-center “Blue Sky Radiomics” study on stage III unresectable NSCLC

BACKGROUND AND PURPOSE: In the retrospective-prospective multi-center "Blue Sky Radiomics” study (NCT04364776), we plan to test a pre-defined radiomic signature in a series of stage III unresectable NSCLC patients undergoing chemoradiotherapy and maintenance immunotherapy. As a necessary prelim...

Descripción completa

Detalles Bibliográficos
Autores principales: Cabini, Raffaella Fiamma, Brero, Francesca, Lancia, Andrea, Stelitano, Chiara, Oneta, Olga, Ballante, Elena, Puppo, Emanuela, Mariani, Manuel, Alì, Emanuele, Bartolomeo, Valentina, Montesano, Marianna, Merizzoli, Elisa, Aluia, Diana, Agustoni, Francesco, Stella, Giulia Maria, Sun, Roger, Bianchini, Linda, Deutsch, Eric, Figini, Silvia, Bortolotto, Chandra, Preda, Lorenzo, Lascialfari, Alessandro, Filippi, Andrea Riccardo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8901939/
https://www.ncbi.nlm.nih.gov/pubmed/35254525
http://dx.doi.org/10.1186/s13244-022-01171-1
_version_ 1784664479809667072
author Cabini, Raffaella Fiamma
Brero, Francesca
Lancia, Andrea
Stelitano, Chiara
Oneta, Olga
Ballante, Elena
Puppo, Emanuela
Mariani, Manuel
Alì, Emanuele
Bartolomeo, Valentina
Montesano, Marianna
Merizzoli, Elisa
Aluia, Diana
Agustoni, Francesco
Stella, Giulia Maria
Sun, Roger
Bianchini, Linda
Deutsch, Eric
Figini, Silvia
Bortolotto, Chandra
Preda, Lorenzo
Lascialfari, Alessandro
Filippi, Andrea Riccardo
author_facet Cabini, Raffaella Fiamma
Brero, Francesca
Lancia, Andrea
Stelitano, Chiara
Oneta, Olga
Ballante, Elena
Puppo, Emanuela
Mariani, Manuel
Alì, Emanuele
Bartolomeo, Valentina
Montesano, Marianna
Merizzoli, Elisa
Aluia, Diana
Agustoni, Francesco
Stella, Giulia Maria
Sun, Roger
Bianchini, Linda
Deutsch, Eric
Figini, Silvia
Bortolotto, Chandra
Preda, Lorenzo
Lascialfari, Alessandro
Filippi, Andrea Riccardo
author_sort Cabini, Raffaella Fiamma
collection PubMed
description BACKGROUND AND PURPOSE: In the retrospective-prospective multi-center "Blue Sky Radiomics” study (NCT04364776), we plan to test a pre-defined radiomic signature in a series of stage III unresectable NSCLC patients undergoing chemoradiotherapy and maintenance immunotherapy. As a necessary preliminary step, we explore the influence of different image-acquisition parameters on radiomic features’ reproducibility and apply methods for harmonization. MATERIAL AND METHODS: We identified the primary lung tumor on two computed tomography (CT) series for each patient, acquired before and after chemoradiation with i.v. contrast medium and with different scanners. Tumor segmentation was performed by two oncological imaging specialists (thoracic radiologist and radio-oncologist) using the Oncentra Masterplan® software. We extracted 42 radiomic features from the specific ROIs (LIFEx). To assess the impact of different acquisition parameters on features extraction, we used the Combat tool with nonparametric adjustment and the longitudinal version (LongComBat). RESULTS: We defined 14 CT acquisition protocols for the harmonization process. Before harmonization, 76% of the features were significantly influenced by these protocols. After, all extracted features resulted in being independent of the acquisition parameters. In contrast, 5% of the LongComBat harmonized features still depended on acquisition protocols. CONCLUSIONS: We reduced the impact of different CT acquisition protocols on radiomic features extraction in a group of patients enrolled in a radiomic study on stage III NSCLC. The harmonization process appears essential for the quality of radiomic data and for their reproducibility. ClinicalTrials.gov Identifier: NCT04364776, First Posted:April 28, 2020, Actual Study Start Date: April 15, 2020, https://clinicaltrials.gov/ct2/show/NCT04364776. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13244-022-01171-1.
format Online
Article
Text
id pubmed-8901939
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Springer Vienna
record_format MEDLINE/PubMed
spelling pubmed-89019392022-03-15 Preliminary report on harmonization of features extraction process using the ComBat tool in the multi-center “Blue Sky Radiomics” study on stage III unresectable NSCLC Cabini, Raffaella Fiamma Brero, Francesca Lancia, Andrea Stelitano, Chiara Oneta, Olga Ballante, Elena Puppo, Emanuela Mariani, Manuel Alì, Emanuele Bartolomeo, Valentina Montesano, Marianna Merizzoli, Elisa Aluia, Diana Agustoni, Francesco Stella, Giulia Maria Sun, Roger Bianchini, Linda Deutsch, Eric Figini, Silvia Bortolotto, Chandra Preda, Lorenzo Lascialfari, Alessandro Filippi, Andrea Riccardo Insights Imaging Original Article BACKGROUND AND PURPOSE: In the retrospective-prospective multi-center "Blue Sky Radiomics” study (NCT04364776), we plan to test a pre-defined radiomic signature in a series of stage III unresectable NSCLC patients undergoing chemoradiotherapy and maintenance immunotherapy. As a necessary preliminary step, we explore the influence of different image-acquisition parameters on radiomic features’ reproducibility and apply methods for harmonization. MATERIAL AND METHODS: We identified the primary lung tumor on two computed tomography (CT) series for each patient, acquired before and after chemoradiation with i.v. contrast medium and with different scanners. Tumor segmentation was performed by two oncological imaging specialists (thoracic radiologist and radio-oncologist) using the Oncentra Masterplan® software. We extracted 42 radiomic features from the specific ROIs (LIFEx). To assess the impact of different acquisition parameters on features extraction, we used the Combat tool with nonparametric adjustment and the longitudinal version (LongComBat). RESULTS: We defined 14 CT acquisition protocols for the harmonization process. Before harmonization, 76% of the features were significantly influenced by these protocols. After, all extracted features resulted in being independent of the acquisition parameters. In contrast, 5% of the LongComBat harmonized features still depended on acquisition protocols. CONCLUSIONS: We reduced the impact of different CT acquisition protocols on radiomic features extraction in a group of patients enrolled in a radiomic study on stage III NSCLC. The harmonization process appears essential for the quality of radiomic data and for their reproducibility. ClinicalTrials.gov Identifier: NCT04364776, First Posted:April 28, 2020, Actual Study Start Date: April 15, 2020, https://clinicaltrials.gov/ct2/show/NCT04364776. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13244-022-01171-1. Springer Vienna 2022-03-07 /pmc/articles/PMC8901939/ /pubmed/35254525 http://dx.doi.org/10.1186/s13244-022-01171-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Cabini, Raffaella Fiamma
Brero, Francesca
Lancia, Andrea
Stelitano, Chiara
Oneta, Olga
Ballante, Elena
Puppo, Emanuela
Mariani, Manuel
Alì, Emanuele
Bartolomeo, Valentina
Montesano, Marianna
Merizzoli, Elisa
Aluia, Diana
Agustoni, Francesco
Stella, Giulia Maria
Sun, Roger
Bianchini, Linda
Deutsch, Eric
Figini, Silvia
Bortolotto, Chandra
Preda, Lorenzo
Lascialfari, Alessandro
Filippi, Andrea Riccardo
Preliminary report on harmonization of features extraction process using the ComBat tool in the multi-center “Blue Sky Radiomics” study on stage III unresectable NSCLC
title Preliminary report on harmonization of features extraction process using the ComBat tool in the multi-center “Blue Sky Radiomics” study on stage III unresectable NSCLC
title_full Preliminary report on harmonization of features extraction process using the ComBat tool in the multi-center “Blue Sky Radiomics” study on stage III unresectable NSCLC
title_fullStr Preliminary report on harmonization of features extraction process using the ComBat tool in the multi-center “Blue Sky Radiomics” study on stage III unresectable NSCLC
title_full_unstemmed Preliminary report on harmonization of features extraction process using the ComBat tool in the multi-center “Blue Sky Radiomics” study on stage III unresectable NSCLC
title_short Preliminary report on harmonization of features extraction process using the ComBat tool in the multi-center “Blue Sky Radiomics” study on stage III unresectable NSCLC
title_sort preliminary report on harmonization of features extraction process using the combat tool in the multi-center “blue sky radiomics” study on stage iii unresectable nsclc
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8901939/
https://www.ncbi.nlm.nih.gov/pubmed/35254525
http://dx.doi.org/10.1186/s13244-022-01171-1
work_keys_str_mv AT cabiniraffaellafiamma preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT brerofrancesca preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT lanciaandrea preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT stelitanochiara preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT onetaolga preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT ballanteelena preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT puppoemanuela preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT marianimanuel preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT aliemanuele preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT bartolomeovalentina preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT montesanomarianna preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT merizzolielisa preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT aluiadiana preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT agustonifrancesco preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT stellagiuliamaria preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT sunroger preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT bianchinilinda preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT deutscheric preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT figinisilvia preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT bortolottochandra preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT predalorenzo preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT lascialfarialessandro preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc
AT filippiandreariccardo preliminaryreportonharmonizationoffeaturesextractionprocessusingthecombattoolinthemulticenterblueskyradiomicsstudyonstageiiiunresectablensclc