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CD8(+) T Cell-Associated Gene Signature Correlates With Prognosis Risk and Immunotherapy Response in Patients With Lung Adenocarcinoma
The presence of infiltrating CD8(+) T lymphocytes in the tumor microenvironment of lung adenocarcinoma (LUAD) is correlated with improved patient prognosis, but underlying regulatory mechanisms remain unknown. To identify biomarkers to improve early diagnosis and treatment of LUAD, we downloaded 13...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8902308/ https://www.ncbi.nlm.nih.gov/pubmed/35273597 http://dx.doi.org/10.3389/fimmu.2022.806877 |
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author | Zhang, Minghui Ma, Jianli Guo, Qiuyue Ding, Shuang Wang, Yan Pu, Haihong |
author_facet | Zhang, Minghui Ma, Jianli Guo, Qiuyue Ding, Shuang Wang, Yan Pu, Haihong |
author_sort | Zhang, Minghui |
collection | PubMed |
description | The presence of infiltrating CD8(+) T lymphocytes in the tumor microenvironment of lung adenocarcinoma (LUAD) is correlated with improved patient prognosis, but underlying regulatory mechanisms remain unknown. To identify biomarkers to improve early diagnosis and treatment of LUAD, we downloaded 13 immune cell line-associated datasets from the GEO database. We identified CD8(+) T cell-associated genes via weighted correlation network analysis. We constructed molecular subtypes based on CD8(+) T cell-associated genes and constructed a multi-gene signature. We identified 252 CD8(+) T cell-associated genes significantly enriched in immune function-related pathways and two molecular subtypes of LUAD (immune cluster 1 [IC1] and IC2) using our CD8(+) T cell-associated gene signature. Patients with the IC2 subtype had a higher tumor mutation burden and lower immune infiltration scores, whereas those with the IC1 subtype were more sensitive to immune checkpoint inhibitors. Prioritizing the top candidate genes to construct a 10-gene signature, we validated our model using independent GSE and TCGA datasets to confirm its robustness and stable prognostic ability. Our risk model demonstrated good predictive efficacy using the Imvigor210 immunotherapy dataset. Thus, we established a novel and robust CD8(+) T cell-associated gene signature, which could help assess prognostic risk and immunotherapy response in LUAD patients. |
format | Online Article Text |
id | pubmed-8902308 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89023082022-03-09 CD8(+) T Cell-Associated Gene Signature Correlates With Prognosis Risk and Immunotherapy Response in Patients With Lung Adenocarcinoma Zhang, Minghui Ma, Jianli Guo, Qiuyue Ding, Shuang Wang, Yan Pu, Haihong Front Immunol Immunology The presence of infiltrating CD8(+) T lymphocytes in the tumor microenvironment of lung adenocarcinoma (LUAD) is correlated with improved patient prognosis, but underlying regulatory mechanisms remain unknown. To identify biomarkers to improve early diagnosis and treatment of LUAD, we downloaded 13 immune cell line-associated datasets from the GEO database. We identified CD8(+) T cell-associated genes via weighted correlation network analysis. We constructed molecular subtypes based on CD8(+) T cell-associated genes and constructed a multi-gene signature. We identified 252 CD8(+) T cell-associated genes significantly enriched in immune function-related pathways and two molecular subtypes of LUAD (immune cluster 1 [IC1] and IC2) using our CD8(+) T cell-associated gene signature. Patients with the IC2 subtype had a higher tumor mutation burden and lower immune infiltration scores, whereas those with the IC1 subtype were more sensitive to immune checkpoint inhibitors. Prioritizing the top candidate genes to construct a 10-gene signature, we validated our model using independent GSE and TCGA datasets to confirm its robustness and stable prognostic ability. Our risk model demonstrated good predictive efficacy using the Imvigor210 immunotherapy dataset. Thus, we established a novel and robust CD8(+) T cell-associated gene signature, which could help assess prognostic risk and immunotherapy response in LUAD patients. Frontiers Media S.A. 2022-02-22 /pmc/articles/PMC8902308/ /pubmed/35273597 http://dx.doi.org/10.3389/fimmu.2022.806877 Text en Copyright © 2022 Zhang, Ma, Guo, Ding, Wang and Pu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Zhang, Minghui Ma, Jianli Guo, Qiuyue Ding, Shuang Wang, Yan Pu, Haihong CD8(+) T Cell-Associated Gene Signature Correlates With Prognosis Risk and Immunotherapy Response in Patients With Lung Adenocarcinoma |
title | CD8(+) T Cell-Associated Gene Signature Correlates With Prognosis Risk and Immunotherapy Response in Patients With Lung Adenocarcinoma |
title_full | CD8(+) T Cell-Associated Gene Signature Correlates With Prognosis Risk and Immunotherapy Response in Patients With Lung Adenocarcinoma |
title_fullStr | CD8(+) T Cell-Associated Gene Signature Correlates With Prognosis Risk and Immunotherapy Response in Patients With Lung Adenocarcinoma |
title_full_unstemmed | CD8(+) T Cell-Associated Gene Signature Correlates With Prognosis Risk and Immunotherapy Response in Patients With Lung Adenocarcinoma |
title_short | CD8(+) T Cell-Associated Gene Signature Correlates With Prognosis Risk and Immunotherapy Response in Patients With Lung Adenocarcinoma |
title_sort | cd8(+) t cell-associated gene signature correlates with prognosis risk and immunotherapy response in patients with lung adenocarcinoma |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8902308/ https://www.ncbi.nlm.nih.gov/pubmed/35273597 http://dx.doi.org/10.3389/fimmu.2022.806877 |
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