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Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer

Long noncoding RNAs (lncRNAs) have diverse functions, including immune regulation. Increasing studies have reported immune-related lncRNAs in the prognosis of multiple cancers. In this study, we developed an individualized signature containing 13 immune-related lncRNA pairs (IRLPs) which could predi...

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Autores principales: Nie, Chuang, Zhai, Jiabao, Wang, Qi, Zhu, Xiaojie, Xiang, Guanghui, Liu, Chang, Liu, Tianyu, Wang, Wanyu, Wang, Yimin, Zhao, Yashuang, Tian, Wenjing, Xue, Yingwei, Zhou, Haibo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8902466/
https://www.ncbi.nlm.nih.gov/pubmed/35273959
http://dx.doi.org/10.3389/fcell.2022.805623
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author Nie, Chuang
Zhai, Jiabao
Wang, Qi
Zhu, Xiaojie
Xiang, Guanghui
Liu, Chang
Liu, Tianyu
Wang, Wanyu
Wang, Yimin
Zhao, Yashuang
Tian, Wenjing
Xue, Yingwei
Zhou, Haibo
author_facet Nie, Chuang
Zhai, Jiabao
Wang, Qi
Zhu, Xiaojie
Xiang, Guanghui
Liu, Chang
Liu, Tianyu
Wang, Wanyu
Wang, Yimin
Zhao, Yashuang
Tian, Wenjing
Xue, Yingwei
Zhou, Haibo
author_sort Nie, Chuang
collection PubMed
description Long noncoding RNAs (lncRNAs) have diverse functions, including immune regulation. Increasing studies have reported immune-related lncRNAs in the prognosis of multiple cancers. In this study, we developed an individualized signature containing 13 immune-related lncRNA pairs (IRLPs) which could predict the overall survival, disease-free survival, progression-free survival, and disease-specific survival of gastric cancer (GC) patients in The Cancer Genome Atlas (TCGA) cohort, and internal and external validations, signature comparisons, and subgroup analyses further confirmed its superiority, stability, and generalizability. Notably, this signature also showed good applicability in discriminating the prognosis of pan-cancer patients. Then, we constructed and validated a nomogram for overall survival based on the signature and clinical factors, which allowed more accurate predictions of GC prognosis. In addition, we revealed that the low survival rate of patients with high-risk scores may be due to their aggressive clinical features, enriched cancer-related signaling pathways, the infiltration of specific immunosuppressive cells, and low tumor mutation burden. We further predicted obviously worse immunotherapeutic responses in the high-risk groups and identified some candidate compounds targeting GC risk group differentiation. This signature based on the IRLPs may be promising for predicting the survival outcomes and immunotherapeutic responses of GC patients in clinical practice.
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spelling pubmed-89024662022-03-09 Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer Nie, Chuang Zhai, Jiabao Wang, Qi Zhu, Xiaojie Xiang, Guanghui Liu, Chang Liu, Tianyu Wang, Wanyu Wang, Yimin Zhao, Yashuang Tian, Wenjing Xue, Yingwei Zhou, Haibo Front Cell Dev Biol Cell and Developmental Biology Long noncoding RNAs (lncRNAs) have diverse functions, including immune regulation. Increasing studies have reported immune-related lncRNAs in the prognosis of multiple cancers. In this study, we developed an individualized signature containing 13 immune-related lncRNA pairs (IRLPs) which could predict the overall survival, disease-free survival, progression-free survival, and disease-specific survival of gastric cancer (GC) patients in The Cancer Genome Atlas (TCGA) cohort, and internal and external validations, signature comparisons, and subgroup analyses further confirmed its superiority, stability, and generalizability. Notably, this signature also showed good applicability in discriminating the prognosis of pan-cancer patients. Then, we constructed and validated a nomogram for overall survival based on the signature and clinical factors, which allowed more accurate predictions of GC prognosis. In addition, we revealed that the low survival rate of patients with high-risk scores may be due to their aggressive clinical features, enriched cancer-related signaling pathways, the infiltration of specific immunosuppressive cells, and low tumor mutation burden. We further predicted obviously worse immunotherapeutic responses in the high-risk groups and identified some candidate compounds targeting GC risk group differentiation. This signature based on the IRLPs may be promising for predicting the survival outcomes and immunotherapeutic responses of GC patients in clinical practice. Frontiers Media S.A. 2022-02-22 /pmc/articles/PMC8902466/ /pubmed/35273959 http://dx.doi.org/10.3389/fcell.2022.805623 Text en Copyright © 2022 Nie, Zhai, Wang, Zhu, Xiang, Liu, Liu, Wang, Wang, Zhao, Tian, Xue and Zhou. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Nie, Chuang
Zhai, Jiabao
Wang, Qi
Zhu, Xiaojie
Xiang, Guanghui
Liu, Chang
Liu, Tianyu
Wang, Wanyu
Wang, Yimin
Zhao, Yashuang
Tian, Wenjing
Xue, Yingwei
Zhou, Haibo
Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer
title Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer
title_full Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer
title_fullStr Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer
title_full_unstemmed Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer
title_short Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer
title_sort comprehensive analysis of an individualized immune-related lncrna pair signature in gastric cancer
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8902466/
https://www.ncbi.nlm.nih.gov/pubmed/35273959
http://dx.doi.org/10.3389/fcell.2022.805623
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