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author Dorkenwald, Sven
McKellar, Claire E.
Macrina, Thomas
Kemnitz, Nico
Lee, Kisuk
Lu, Ran
Wu, Jingpeng
Popovych, Sergiy
Mitchell, Eric
Nehoran, Barak
Jia, Zhen
Bae, J. Alexander
Mu, Shang
Ih, Dodam
Castro, Manuel
Ogedengbe, Oluwaseun
Halageri, Akhilesh
Kuehner, Kai
Sterling, Amy R.
Ashwood, Zoe
Zung, Jonathan
Brittain, Derrick
Collman, Forrest
Schneider-Mizell, Casey
Jordan, Chris
Silversmith, William
Baker, Christa
Deutsch, David
Encarnacion-Rivera, Lucas
Kumar, Sandeep
Burke, Austin
Bland, Doug
Gager, Jay
Hebditch, James
Koolman, Selden
Moore, Merlin
Morejohn, Sarah
Silverman, Ben
Willie, Kyle
Willie, Ryan
Yu, Szi-chieh
Murthy, Mala
Seung, H. Sebastian
author_facet Dorkenwald, Sven
McKellar, Claire E.
Macrina, Thomas
Kemnitz, Nico
Lee, Kisuk
Lu, Ran
Wu, Jingpeng
Popovych, Sergiy
Mitchell, Eric
Nehoran, Barak
Jia, Zhen
Bae, J. Alexander
Mu, Shang
Ih, Dodam
Castro, Manuel
Ogedengbe, Oluwaseun
Halageri, Akhilesh
Kuehner, Kai
Sterling, Amy R.
Ashwood, Zoe
Zung, Jonathan
Brittain, Derrick
Collman, Forrest
Schneider-Mizell, Casey
Jordan, Chris
Silversmith, William
Baker, Christa
Deutsch, David
Encarnacion-Rivera, Lucas
Kumar, Sandeep
Burke, Austin
Bland, Doug
Gager, Jay
Hebditch, James
Koolman, Selden
Moore, Merlin
Morejohn, Sarah
Silverman, Ben
Willie, Kyle
Willie, Ryan
Yu, Szi-chieh
Murthy, Mala
Seung, H. Sebastian
author_sort Dorkenwald, Sven
collection PubMed
description Due to advances in automated image acquisition and analysis, whole-brain connectomes with 100,000 or more neurons are on the horizon. Proofreading of whole-brain automated reconstructions will require many person-years of effort, due to the huge volumes of data involved. Here we present FlyWire, an online community for proofreading neural circuits in a Drosophila melanogaster brain, and explain how its computational and social structures are organized to scale up to whole-brain connectomics. Browser-based 3D interactive segmentation by collaborative editing of a spatially chunked supervoxel graph makes it possible to distribute proofreading to individuals located virtually anywhere in the world. Information in the edit history is programmatically accessible for a variety of uses such as estimating proofreading accuracy or building incentive systems. An open community accelerates proofreading by recruiting more participants and accelerates scientific discovery by requiring information sharing. We demonstrate how FlyWire enables circuit analysis by reconstructing and analysing the connectome of mechanosensory neurons.
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spelling pubmed-89031662022-06-23 FlyWire: Online community for whole-brain connectomics Dorkenwald, Sven McKellar, Claire E. Macrina, Thomas Kemnitz, Nico Lee, Kisuk Lu, Ran Wu, Jingpeng Popovych, Sergiy Mitchell, Eric Nehoran, Barak Jia, Zhen Bae, J. Alexander Mu, Shang Ih, Dodam Castro, Manuel Ogedengbe, Oluwaseun Halageri, Akhilesh Kuehner, Kai Sterling, Amy R. Ashwood, Zoe Zung, Jonathan Brittain, Derrick Collman, Forrest Schneider-Mizell, Casey Jordan, Chris Silversmith, William Baker, Christa Deutsch, David Encarnacion-Rivera, Lucas Kumar, Sandeep Burke, Austin Bland, Doug Gager, Jay Hebditch, James Koolman, Selden Moore, Merlin Morejohn, Sarah Silverman, Ben Willie, Kyle Willie, Ryan Yu, Szi-chieh Murthy, Mala Seung, H. Sebastian Nat Methods Article Due to advances in automated image acquisition and analysis, whole-brain connectomes with 100,000 or more neurons are on the horizon. Proofreading of whole-brain automated reconstructions will require many person-years of effort, due to the huge volumes of data involved. Here we present FlyWire, an online community for proofreading neural circuits in a Drosophila melanogaster brain, and explain how its computational and social structures are organized to scale up to whole-brain connectomics. Browser-based 3D interactive segmentation by collaborative editing of a spatially chunked supervoxel graph makes it possible to distribute proofreading to individuals located virtually anywhere in the world. Information in the edit history is programmatically accessible for a variety of uses such as estimating proofreading accuracy or building incentive systems. An open community accelerates proofreading by recruiting more participants and accelerates scientific discovery by requiring information sharing. We demonstrate how FlyWire enables circuit analysis by reconstructing and analysing the connectome of mechanosensory neurons. 2022-01 2021-12-23 /pmc/articles/PMC8903166/ /pubmed/34949809 http://dx.doi.org/10.1038/s41592-021-01330-0 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: https://www.springernature.com/gp/open-research/policies/accepted-manuscript-terms
spellingShingle Article
Dorkenwald, Sven
McKellar, Claire E.
Macrina, Thomas
Kemnitz, Nico
Lee, Kisuk
Lu, Ran
Wu, Jingpeng
Popovych, Sergiy
Mitchell, Eric
Nehoran, Barak
Jia, Zhen
Bae, J. Alexander
Mu, Shang
Ih, Dodam
Castro, Manuel
Ogedengbe, Oluwaseun
Halageri, Akhilesh
Kuehner, Kai
Sterling, Amy R.
Ashwood, Zoe
Zung, Jonathan
Brittain, Derrick
Collman, Forrest
Schneider-Mizell, Casey
Jordan, Chris
Silversmith, William
Baker, Christa
Deutsch, David
Encarnacion-Rivera, Lucas
Kumar, Sandeep
Burke, Austin
Bland, Doug
Gager, Jay
Hebditch, James
Koolman, Selden
Moore, Merlin
Morejohn, Sarah
Silverman, Ben
Willie, Kyle
Willie, Ryan
Yu, Szi-chieh
Murthy, Mala
Seung, H. Sebastian
FlyWire: Online community for whole-brain connectomics
title FlyWire: Online community for whole-brain connectomics
title_full FlyWire: Online community for whole-brain connectomics
title_fullStr FlyWire: Online community for whole-brain connectomics
title_full_unstemmed FlyWire: Online community for whole-brain connectomics
title_short FlyWire: Online community for whole-brain connectomics
title_sort flywire: online community for whole-brain connectomics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903166/
https://www.ncbi.nlm.nih.gov/pubmed/34949809
http://dx.doi.org/10.1038/s41592-021-01330-0
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