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FlyWire: Online community for whole-brain connectomics
Due to advances in automated image acquisition and analysis, whole-brain connectomes with 100,000 or more neurons are on the horizon. Proofreading of whole-brain automated reconstructions will require many person-years of effort, due to the huge volumes of data involved. Here we present FlyWire, an...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903166/ https://www.ncbi.nlm.nih.gov/pubmed/34949809 http://dx.doi.org/10.1038/s41592-021-01330-0 |
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author | Dorkenwald, Sven McKellar, Claire E. Macrina, Thomas Kemnitz, Nico Lee, Kisuk Lu, Ran Wu, Jingpeng Popovych, Sergiy Mitchell, Eric Nehoran, Barak Jia, Zhen Bae, J. Alexander Mu, Shang Ih, Dodam Castro, Manuel Ogedengbe, Oluwaseun Halageri, Akhilesh Kuehner, Kai Sterling, Amy R. Ashwood, Zoe Zung, Jonathan Brittain, Derrick Collman, Forrest Schneider-Mizell, Casey Jordan, Chris Silversmith, William Baker, Christa Deutsch, David Encarnacion-Rivera, Lucas Kumar, Sandeep Burke, Austin Bland, Doug Gager, Jay Hebditch, James Koolman, Selden Moore, Merlin Morejohn, Sarah Silverman, Ben Willie, Kyle Willie, Ryan Yu, Szi-chieh Murthy, Mala Seung, H. Sebastian |
author_facet | Dorkenwald, Sven McKellar, Claire E. Macrina, Thomas Kemnitz, Nico Lee, Kisuk Lu, Ran Wu, Jingpeng Popovych, Sergiy Mitchell, Eric Nehoran, Barak Jia, Zhen Bae, J. Alexander Mu, Shang Ih, Dodam Castro, Manuel Ogedengbe, Oluwaseun Halageri, Akhilesh Kuehner, Kai Sterling, Amy R. Ashwood, Zoe Zung, Jonathan Brittain, Derrick Collman, Forrest Schneider-Mizell, Casey Jordan, Chris Silversmith, William Baker, Christa Deutsch, David Encarnacion-Rivera, Lucas Kumar, Sandeep Burke, Austin Bland, Doug Gager, Jay Hebditch, James Koolman, Selden Moore, Merlin Morejohn, Sarah Silverman, Ben Willie, Kyle Willie, Ryan Yu, Szi-chieh Murthy, Mala Seung, H. Sebastian |
author_sort | Dorkenwald, Sven |
collection | PubMed |
description | Due to advances in automated image acquisition and analysis, whole-brain connectomes with 100,000 or more neurons are on the horizon. Proofreading of whole-brain automated reconstructions will require many person-years of effort, due to the huge volumes of data involved. Here we present FlyWire, an online community for proofreading neural circuits in a Drosophila melanogaster brain, and explain how its computational and social structures are organized to scale up to whole-brain connectomics. Browser-based 3D interactive segmentation by collaborative editing of a spatially chunked supervoxel graph makes it possible to distribute proofreading to individuals located virtually anywhere in the world. Information in the edit history is programmatically accessible for a variety of uses such as estimating proofreading accuracy or building incentive systems. An open community accelerates proofreading by recruiting more participants and accelerates scientific discovery by requiring information sharing. We demonstrate how FlyWire enables circuit analysis by reconstructing and analysing the connectome of mechanosensory neurons. |
format | Online Article Text |
id | pubmed-8903166 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
record_format | MEDLINE/PubMed |
spelling | pubmed-89031662022-06-23 FlyWire: Online community for whole-brain connectomics Dorkenwald, Sven McKellar, Claire E. Macrina, Thomas Kemnitz, Nico Lee, Kisuk Lu, Ran Wu, Jingpeng Popovych, Sergiy Mitchell, Eric Nehoran, Barak Jia, Zhen Bae, J. Alexander Mu, Shang Ih, Dodam Castro, Manuel Ogedengbe, Oluwaseun Halageri, Akhilesh Kuehner, Kai Sterling, Amy R. Ashwood, Zoe Zung, Jonathan Brittain, Derrick Collman, Forrest Schneider-Mizell, Casey Jordan, Chris Silversmith, William Baker, Christa Deutsch, David Encarnacion-Rivera, Lucas Kumar, Sandeep Burke, Austin Bland, Doug Gager, Jay Hebditch, James Koolman, Selden Moore, Merlin Morejohn, Sarah Silverman, Ben Willie, Kyle Willie, Ryan Yu, Szi-chieh Murthy, Mala Seung, H. Sebastian Nat Methods Article Due to advances in automated image acquisition and analysis, whole-brain connectomes with 100,000 or more neurons are on the horizon. Proofreading of whole-brain automated reconstructions will require many person-years of effort, due to the huge volumes of data involved. Here we present FlyWire, an online community for proofreading neural circuits in a Drosophila melanogaster brain, and explain how its computational and social structures are organized to scale up to whole-brain connectomics. Browser-based 3D interactive segmentation by collaborative editing of a spatially chunked supervoxel graph makes it possible to distribute proofreading to individuals located virtually anywhere in the world. Information in the edit history is programmatically accessible for a variety of uses such as estimating proofreading accuracy or building incentive systems. An open community accelerates proofreading by recruiting more participants and accelerates scientific discovery by requiring information sharing. We demonstrate how FlyWire enables circuit analysis by reconstructing and analysing the connectome of mechanosensory neurons. 2022-01 2021-12-23 /pmc/articles/PMC8903166/ /pubmed/34949809 http://dx.doi.org/10.1038/s41592-021-01330-0 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: https://www.springernature.com/gp/open-research/policies/accepted-manuscript-terms |
spellingShingle | Article Dorkenwald, Sven McKellar, Claire E. Macrina, Thomas Kemnitz, Nico Lee, Kisuk Lu, Ran Wu, Jingpeng Popovych, Sergiy Mitchell, Eric Nehoran, Barak Jia, Zhen Bae, J. Alexander Mu, Shang Ih, Dodam Castro, Manuel Ogedengbe, Oluwaseun Halageri, Akhilesh Kuehner, Kai Sterling, Amy R. Ashwood, Zoe Zung, Jonathan Brittain, Derrick Collman, Forrest Schneider-Mizell, Casey Jordan, Chris Silversmith, William Baker, Christa Deutsch, David Encarnacion-Rivera, Lucas Kumar, Sandeep Burke, Austin Bland, Doug Gager, Jay Hebditch, James Koolman, Selden Moore, Merlin Morejohn, Sarah Silverman, Ben Willie, Kyle Willie, Ryan Yu, Szi-chieh Murthy, Mala Seung, H. Sebastian FlyWire: Online community for whole-brain connectomics |
title | FlyWire: Online community for whole-brain connectomics |
title_full | FlyWire: Online community for whole-brain connectomics |
title_fullStr | FlyWire: Online community for whole-brain connectomics |
title_full_unstemmed | FlyWire: Online community for whole-brain connectomics |
title_short | FlyWire: Online community for whole-brain connectomics |
title_sort | flywire: online community for whole-brain connectomics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903166/ https://www.ncbi.nlm.nih.gov/pubmed/34949809 http://dx.doi.org/10.1038/s41592-021-01330-0 |
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