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Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors

OBJECTIVE: The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. MATERIALS AND METHODS: A covariate-dependent, continuous...

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Autores principales: Soper, Braden C, Cadena, Jose, Nguyen, Sam, Chan, Kwan Ho Ryan, Kiszka, Paul, Womack, Lucas, Work, Mark, Duggan, Joan M, Haller, Steven T, Hanrahan, Jennifer A, Kennedy, David J, Mukundan, Deepa, Ray, Priyadip
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903413/
https://www.ncbi.nlm.nih.gov/pubmed/35137149
http://dx.doi.org/10.1093/jamia/ocac012
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author Soper, Braden C
Cadena, Jose
Nguyen, Sam
Chan, Kwan Ho Ryan
Kiszka, Paul
Womack, Lucas
Work, Mark
Duggan, Joan M
Haller, Steven T
Hanrahan, Jennifer A
Kennedy, David J
Mukundan, Deepa
Ray, Priyadip
author_facet Soper, Braden C
Cadena, Jose
Nguyen, Sam
Chan, Kwan Ho Ryan
Kiszka, Paul
Womack, Lucas
Work, Mark
Duggan, Joan M
Haller, Steven T
Hanrahan, Jennifer A
Kennedy, David J
Mukundan, Deepa
Ray, Priyadip
author_sort Soper, Braden C
collection PubMed
description OBJECTIVE: The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. MATERIALS AND METHODS: A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression. RESULTS: The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state. DISCUSSION: Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients. CONCLUSION: Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques.
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spelling pubmed-89034132022-03-09 Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors Soper, Braden C Cadena, Jose Nguyen, Sam Chan, Kwan Ho Ryan Kiszka, Paul Womack, Lucas Work, Mark Duggan, Joan M Haller, Steven T Hanrahan, Jennifer A Kennedy, David J Mukundan, Deepa Ray, Priyadip J Am Med Inform Assoc Research and Applications OBJECTIVE: The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. MATERIALS AND METHODS: A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression. RESULTS: The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state. DISCUSSION: Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients. CONCLUSION: Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques. Oxford University Press 2022-02-22 /pmc/articles/PMC8903413/ /pubmed/35137149 http://dx.doi.org/10.1093/jamia/ocac012 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_modelThis article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model (https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model)
spellingShingle Research and Applications
Soper, Braden C
Cadena, Jose
Nguyen, Sam
Chan, Kwan Ho Ryan
Kiszka, Paul
Womack, Lucas
Work, Mark
Duggan, Joan M
Haller, Steven T
Hanrahan, Jennifer A
Kennedy, David J
Mukundan, Deepa
Ray, Priyadip
Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors
title Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors
title_full Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors
title_fullStr Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors
title_full_unstemmed Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors
title_short Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors
title_sort dynamic modeling of hospitalized covid-19 patients reveals disease state–dependent risk factors
topic Research and Applications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903413/
https://www.ncbi.nlm.nih.gov/pubmed/35137149
http://dx.doi.org/10.1093/jamia/ocac012
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