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Immune-Related Long Non-coding RNA Constructs a Prognostic Signature of Ovarian Cancer

BACKGROUND: Since ovarian cancer leads to the poor prognosis in women all over the world, we aim to construct an immune-related lncRNAs signature to improve the survival of ovarian cancer patients. METHODS: Normal and cancer patient samples and corresponding clinical data of ovarian were obtained fr...

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Autores principales: Sun, Xiaoyu, Li, Shan, Lv, Xuemei, Yan, Yuanyuan, Wei, Minjie, He, Miao, Wang, Xiaobin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903634/
https://www.ncbi.nlm.nih.gov/pubmed/34906078
http://dx.doi.org/10.1186/s12575-021-00161-9
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author Sun, Xiaoyu
Li, Shan
Lv, Xuemei
Yan, Yuanyuan
Wei, Minjie
He, Miao
Wang, Xiaobin
author_facet Sun, Xiaoyu
Li, Shan
Lv, Xuemei
Yan, Yuanyuan
Wei, Minjie
He, Miao
Wang, Xiaobin
author_sort Sun, Xiaoyu
collection PubMed
description BACKGROUND: Since ovarian cancer leads to the poor prognosis in women all over the world, we aim to construct an immune-related lncRNAs signature to improve the survival of ovarian cancer patients. METHODS: Normal and cancer patient samples and corresponding clinical data of ovarian were obtained from The Genotype-Tissue Expression (GTEx) portal and The Cancer Genome Atlas (TCGA) database. The predictive signature was constructed by the lasso penalty Cox proportional hazard regression model. The division of different risk groups was accounting for the optimal critical value of the time-dependent Receiver Operating Characteristic (ROC) curve. Finally, we validated and evaluated the application of this prognostic signature based on the clinical factors, chemo-sensitivity and immune status of different risk groups. RESULTS: The signature was established from 145 DEirlncRNAs and can be shown as an independent prognostic risk factor with accurate prediction on overall survival in ovarian cancer patients. Further analysis on the application of the prognostic signature showed that patients with low-risk had a better sensitivity to chemotherapy and a higher immunogenicity. CONCLUSION: We constructed and verified an effective signature based on DEirlncRNA pairs, which could predict the prognosis, drug sensitivity and immune status of ovarian cancer patients and promote the prognostic estimation and individualized treatment. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12575-021-00161-9.
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spelling pubmed-89036342022-03-18 Immune-Related Long Non-coding RNA Constructs a Prognostic Signature of Ovarian Cancer Sun, Xiaoyu Li, Shan Lv, Xuemei Yan, Yuanyuan Wei, Minjie He, Miao Wang, Xiaobin Biol Proced Online Research BACKGROUND: Since ovarian cancer leads to the poor prognosis in women all over the world, we aim to construct an immune-related lncRNAs signature to improve the survival of ovarian cancer patients. METHODS: Normal and cancer patient samples and corresponding clinical data of ovarian were obtained from The Genotype-Tissue Expression (GTEx) portal and The Cancer Genome Atlas (TCGA) database. The predictive signature was constructed by the lasso penalty Cox proportional hazard regression model. The division of different risk groups was accounting for the optimal critical value of the time-dependent Receiver Operating Characteristic (ROC) curve. Finally, we validated and evaluated the application of this prognostic signature based on the clinical factors, chemo-sensitivity and immune status of different risk groups. RESULTS: The signature was established from 145 DEirlncRNAs and can be shown as an independent prognostic risk factor with accurate prediction on overall survival in ovarian cancer patients. Further analysis on the application of the prognostic signature showed that patients with low-risk had a better sensitivity to chemotherapy and a higher immunogenicity. CONCLUSION: We constructed and verified an effective signature based on DEirlncRNA pairs, which could predict the prognosis, drug sensitivity and immune status of ovarian cancer patients and promote the prognostic estimation and individualized treatment. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12575-021-00161-9. BioMed Central 2021-12-15 /pmc/articles/PMC8903634/ /pubmed/34906078 http://dx.doi.org/10.1186/s12575-021-00161-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Sun, Xiaoyu
Li, Shan
Lv, Xuemei
Yan, Yuanyuan
Wei, Minjie
He, Miao
Wang, Xiaobin
Immune-Related Long Non-coding RNA Constructs a Prognostic Signature of Ovarian Cancer
title Immune-Related Long Non-coding RNA Constructs a Prognostic Signature of Ovarian Cancer
title_full Immune-Related Long Non-coding RNA Constructs a Prognostic Signature of Ovarian Cancer
title_fullStr Immune-Related Long Non-coding RNA Constructs a Prognostic Signature of Ovarian Cancer
title_full_unstemmed Immune-Related Long Non-coding RNA Constructs a Prognostic Signature of Ovarian Cancer
title_short Immune-Related Long Non-coding RNA Constructs a Prognostic Signature of Ovarian Cancer
title_sort immune-related long non-coding rna constructs a prognostic signature of ovarian cancer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903634/
https://www.ncbi.nlm.nih.gov/pubmed/34906078
http://dx.doi.org/10.1186/s12575-021-00161-9
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