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The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae)
Trigonotis peduncularis (Boraginaceae) is an annual or biannual herb widely distributed in temperate Asia and East Europe. The complete chloroplast genome of T. peduncularis was sequenced by high-throughput technologies and assembled for the first time. The complete chloroplast genome of T. peduncul...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903795/ https://www.ncbi.nlm.nih.gov/pubmed/35274042 http://dx.doi.org/10.1080/23802359.2022.2048212 |
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author | Wu, Jian-hua Li, Hui-min Lei, Jin-man Liang, Ze-rui |
author_facet | Wu, Jian-hua Li, Hui-min Lei, Jin-man Liang, Ze-rui |
author_sort | Wu, Jian-hua |
collection | PubMed |
description | Trigonotis peduncularis (Boraginaceae) is an annual or biannual herb widely distributed in temperate Asia and East Europe. The complete chloroplast genome of T. peduncularis was sequenced by high-throughput technologies and assembled for the first time. The complete chloroplast genome of T. peduncularis was 147,508 bp in length with a GC content of 37.6%, which includes a large single-copy region (80,546 bp), a pair of inverted repeats (24,877 bp), and a small single copy (17,208 bp). GC content of IR regions (43.3%) were higher than LSC (35.5%) and SSC (31.1%) regions. The genome was predicted to encode 130 genes, of which 114 were unique, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Result from phylogenetic analysis showed that T. peduncularis was sister to Plagiobothrys nothofulvus, and the intergeneric relationships among the six genera sampled in Boraginaceae were well resolved and strongly supported. |
format | Online Article Text |
id | pubmed-8903795 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-89037952022-03-09 The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae) Wu, Jian-hua Li, Hui-min Lei, Jin-man Liang, Ze-rui Mitochondrial DNA B Resour Mitogenome Announcement Trigonotis peduncularis (Boraginaceae) is an annual or biannual herb widely distributed in temperate Asia and East Europe. The complete chloroplast genome of T. peduncularis was sequenced by high-throughput technologies and assembled for the first time. The complete chloroplast genome of T. peduncularis was 147,508 bp in length with a GC content of 37.6%, which includes a large single-copy region (80,546 bp), a pair of inverted repeats (24,877 bp), and a small single copy (17,208 bp). GC content of IR regions (43.3%) were higher than LSC (35.5%) and SSC (31.1%) regions. The genome was predicted to encode 130 genes, of which 114 were unique, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Result from phylogenetic analysis showed that T. peduncularis was sister to Plagiobothrys nothofulvus, and the intergeneric relationships among the six genera sampled in Boraginaceae were well resolved and strongly supported. Taylor & Francis 2022-03-06 /pmc/articles/PMC8903795/ /pubmed/35274042 http://dx.doi.org/10.1080/23802359.2022.2048212 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wu, Jian-hua Li, Hui-min Lei, Jin-man Liang, Ze-rui The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae) |
title | The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae) |
title_full | The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae) |
title_fullStr | The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae) |
title_short | The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae) |
title_sort | complete chloroplast genome sequence of trigonotis peduncularis (boraginaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903795/ https://www.ncbi.nlm.nih.gov/pubmed/35274042 http://dx.doi.org/10.1080/23802359.2022.2048212 |
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