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The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae)

Trigonotis peduncularis (Boraginaceae) is an annual or biannual herb widely distributed in temperate Asia and East Europe. The complete chloroplast genome of T. peduncularis was sequenced by high-throughput technologies and assembled for the first time. The complete chloroplast genome of T. peduncul...

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Autores principales: Wu, Jian-hua, Li, Hui-min, Lei, Jin-man, Liang, Ze-rui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903795/
https://www.ncbi.nlm.nih.gov/pubmed/35274042
http://dx.doi.org/10.1080/23802359.2022.2048212
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author Wu, Jian-hua
Li, Hui-min
Lei, Jin-man
Liang, Ze-rui
author_facet Wu, Jian-hua
Li, Hui-min
Lei, Jin-man
Liang, Ze-rui
author_sort Wu, Jian-hua
collection PubMed
description Trigonotis peduncularis (Boraginaceae) is an annual or biannual herb widely distributed in temperate Asia and East Europe. The complete chloroplast genome of T. peduncularis was sequenced by high-throughput technologies and assembled for the first time. The complete chloroplast genome of T. peduncularis was 147,508 bp in length with a GC content of 37.6%, which includes a large single-copy region (80,546 bp), a pair of inverted repeats (24,877 bp), and a small single copy (17,208 bp). GC content of IR regions (43.3%) were higher than LSC (35.5%) and SSC (31.1%) regions. The genome was predicted to encode 130 genes, of which 114 were unique, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Result from phylogenetic analysis showed that T. peduncularis was sister to Plagiobothrys nothofulvus, and the intergeneric relationships among the six genera sampled in Boraginaceae were well resolved and strongly supported.
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spelling pubmed-89037952022-03-09 The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae) Wu, Jian-hua Li, Hui-min Lei, Jin-man Liang, Ze-rui Mitochondrial DNA B Resour Mitogenome Announcement Trigonotis peduncularis (Boraginaceae) is an annual or biannual herb widely distributed in temperate Asia and East Europe. The complete chloroplast genome of T. peduncularis was sequenced by high-throughput technologies and assembled for the first time. The complete chloroplast genome of T. peduncularis was 147,508 bp in length with a GC content of 37.6%, which includes a large single-copy region (80,546 bp), a pair of inverted repeats (24,877 bp), and a small single copy (17,208 bp). GC content of IR regions (43.3%) were higher than LSC (35.5%) and SSC (31.1%) regions. The genome was predicted to encode 130 genes, of which 114 were unique, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Result from phylogenetic analysis showed that T. peduncularis was sister to Plagiobothrys nothofulvus, and the intergeneric relationships among the six genera sampled in Boraginaceae were well resolved and strongly supported. Taylor & Francis 2022-03-06 /pmc/articles/PMC8903795/ /pubmed/35274042 http://dx.doi.org/10.1080/23802359.2022.2048212 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wu, Jian-hua
Li, Hui-min
Lei, Jin-man
Liang, Ze-rui
The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae)
title The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae)
title_full The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae)
title_fullStr The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae)
title_full_unstemmed The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae)
title_short The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae)
title_sort complete chloroplast genome sequence of trigonotis peduncularis (boraginaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903795/
https://www.ncbi.nlm.nih.gov/pubmed/35274042
http://dx.doi.org/10.1080/23802359.2022.2048212
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