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External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali

BACKGROUND: Diarrheal illness is a leading cause of antibiotic use for children in low- and middle-income countries. Determination of diarrhea etiology at the point-of-care without reliance on laboratory testing has the potential to reduce inappropriate antibiotic use. METHODS: This prospective obse...

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Autores principales: Garbern, Stephanie Chow, Nelson, Eric J, Nasrin, Sabiha, Keita, Adama Mamby, Brintz, Ben J, Gainey, Monique, Badji, Henry, Nasrin, Dilruba, Howard, Joel, Taniuchi, Mami, Platts-Mills, James A, Kotloff, Karen L, Haque, Rashidul, Levine, Adam C, Sow, Samba O, Alam, Nur Haque, Leung, Daniel T
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903833/
https://www.ncbi.nlm.nih.gov/pubmed/35137684
http://dx.doi.org/10.7554/eLife.72294
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author Garbern, Stephanie Chow
Nelson, Eric J
Nasrin, Sabiha
Keita, Adama Mamby
Brintz, Ben J
Gainey, Monique
Badji, Henry
Nasrin, Dilruba
Howard, Joel
Taniuchi, Mami
Platts-Mills, James A
Kotloff, Karen L
Haque, Rashidul
Levine, Adam C
Sow, Samba O
Alam, Nur Haque
Leung, Daniel T
author_facet Garbern, Stephanie Chow
Nelson, Eric J
Nasrin, Sabiha
Keita, Adama Mamby
Brintz, Ben J
Gainey, Monique
Badji, Henry
Nasrin, Dilruba
Howard, Joel
Taniuchi, Mami
Platts-Mills, James A
Kotloff, Karen L
Haque, Rashidul
Levine, Adam C
Sow, Samba O
Alam, Nur Haque
Leung, Daniel T
author_sort Garbern, Stephanie Chow
collection PubMed
description BACKGROUND: Diarrheal illness is a leading cause of antibiotic use for children in low- and middle-income countries. Determination of diarrhea etiology at the point-of-care without reliance on laboratory testing has the potential to reduce inappropriate antibiotic use. METHODS: This prospective observational study aimed to develop and externally validate the accuracy of a mobile software application (‘App’) for the prediction of viral-only etiology of acute diarrhea in children 0–59 months in Bangladesh and Mali. The App used a previously derived and internally validated model consisting of patient-specific (‘present patient’) clinical variables (age, blood in stool, vomiting, breastfeeding status, and mid-upper arm circumference) as well as location-specific viral diarrhea seasonality curves. The performance of additional models using the ‘present patient’ data combined with other external data sources including location-specific climate, data, recent patient data, and historical population-based prevalence were also evaluated in secondary analysis. Diarrhea etiology was determined with TaqMan Array Card using episode-specific attributable fraction (AFe) >0.5. RESULTS: Of 302 children with acute diarrhea enrolled, 199 had etiologies above the AFe threshold. Viral-only pathogens were detected in 22% of patients in Mali and 63% in Bangladesh. Rotavirus was the most common pathogen detected (16% Mali; 60% Bangladesh). The present patient+ viral seasonality model had an AUC of 0.754 (0.665–0.843) for the sites combined, with calibration-in-the-large α = −0.393 (−0.455––0.331) and calibration slope β = 1.287 (1.207–1.367). By site, the present patient+ recent patient model performed best in Mali with an AUC of 0.783 (0.705–0.86); the present patient+ viral seasonality model performed best in Bangladesh with AUC 0.710 (0.595–0.825). CONCLUSIONS: The App accurately identified children with high likelihood of viral-only diarrhea etiology. Further studies to evaluate the App’s potential use in diagnostic and antimicrobial stewardship are underway. FUNDING: Funding for this study was provided through grants from the Bill and Melinda GatesFoundation (OPP1198876) and the National Institute of Allergy and Infectious Diseases (R01AI135114). Several investigators were also partially supported by a grant from the National Institute of Diabetes and Digestive and Kidney Diseases (R01DK116163). This investigation was also supported by the University of Utah Population Health Research (PHR) Foundation, with funding in part from the National Center for Advancing Translational Sciences of the National Institutes of Health under Award Number UL1TR002538. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. The funders had no role in the study design, data collection, data analysis, interpretation of data, or in the writing or decision to submit the manuscript for publication.
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spelling pubmed-89038332022-03-09 External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali Garbern, Stephanie Chow Nelson, Eric J Nasrin, Sabiha Keita, Adama Mamby Brintz, Ben J Gainey, Monique Badji, Henry Nasrin, Dilruba Howard, Joel Taniuchi, Mami Platts-Mills, James A Kotloff, Karen L Haque, Rashidul Levine, Adam C Sow, Samba O Alam, Nur Haque Leung, Daniel T eLife Epidemiology and Global Health BACKGROUND: Diarrheal illness is a leading cause of antibiotic use for children in low- and middle-income countries. Determination of diarrhea etiology at the point-of-care without reliance on laboratory testing has the potential to reduce inappropriate antibiotic use. METHODS: This prospective observational study aimed to develop and externally validate the accuracy of a mobile software application (‘App’) for the prediction of viral-only etiology of acute diarrhea in children 0–59 months in Bangladesh and Mali. The App used a previously derived and internally validated model consisting of patient-specific (‘present patient’) clinical variables (age, blood in stool, vomiting, breastfeeding status, and mid-upper arm circumference) as well as location-specific viral diarrhea seasonality curves. The performance of additional models using the ‘present patient’ data combined with other external data sources including location-specific climate, data, recent patient data, and historical population-based prevalence were also evaluated in secondary analysis. Diarrhea etiology was determined with TaqMan Array Card using episode-specific attributable fraction (AFe) >0.5. RESULTS: Of 302 children with acute diarrhea enrolled, 199 had etiologies above the AFe threshold. Viral-only pathogens were detected in 22% of patients in Mali and 63% in Bangladesh. Rotavirus was the most common pathogen detected (16% Mali; 60% Bangladesh). The present patient+ viral seasonality model had an AUC of 0.754 (0.665–0.843) for the sites combined, with calibration-in-the-large α = −0.393 (−0.455––0.331) and calibration slope β = 1.287 (1.207–1.367). By site, the present patient+ recent patient model performed best in Mali with an AUC of 0.783 (0.705–0.86); the present patient+ viral seasonality model performed best in Bangladesh with AUC 0.710 (0.595–0.825). CONCLUSIONS: The App accurately identified children with high likelihood of viral-only diarrhea etiology. Further studies to evaluate the App’s potential use in diagnostic and antimicrobial stewardship are underway. FUNDING: Funding for this study was provided through grants from the Bill and Melinda GatesFoundation (OPP1198876) and the National Institute of Allergy and Infectious Diseases (R01AI135114). Several investigators were also partially supported by a grant from the National Institute of Diabetes and Digestive and Kidney Diseases (R01DK116163). This investigation was also supported by the University of Utah Population Health Research (PHR) Foundation, with funding in part from the National Center for Advancing Translational Sciences of the National Institutes of Health under Award Number UL1TR002538. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. The funders had no role in the study design, data collection, data analysis, interpretation of data, or in the writing or decision to submit the manuscript for publication. eLife Sciences Publications, Ltd 2022-02-09 /pmc/articles/PMC8903833/ /pubmed/35137684 http://dx.doi.org/10.7554/eLife.72294 Text en © 2022, Garbern et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Epidemiology and Global Health
Garbern, Stephanie Chow
Nelson, Eric J
Nasrin, Sabiha
Keita, Adama Mamby
Brintz, Ben J
Gainey, Monique
Badji, Henry
Nasrin, Dilruba
Howard, Joel
Taniuchi, Mami
Platts-Mills, James A
Kotloff, Karen L
Haque, Rashidul
Levine, Adam C
Sow, Samba O
Alam, Nur Haque
Leung, Daniel T
External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali
title External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali
title_full External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali
title_fullStr External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali
title_full_unstemmed External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali
title_short External validation of a mobile clinical decision support system for diarrhea etiology prediction in children: A multicenter study in Bangladesh and Mali
title_sort external validation of a mobile clinical decision support system for diarrhea etiology prediction in children: a multicenter study in bangladesh and mali
topic Epidemiology and Global Health
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903833/
https://www.ncbi.nlm.nih.gov/pubmed/35137684
http://dx.doi.org/10.7554/eLife.72294
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