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Machine-Learning Approaches for Predicting the Need of Oxygen Therapy in Early-Stage COVID-19 in Japan: Multicenter Retrospective Observational Study
BACKGROUND: Early prediction of oxygen therapy in patients with coronavirus disease 2019 (COVID-19) is vital for triage. Several machine-learning prognostic models for COVID-19 are currently available. However, external validation of these models has rarely been performed. Therefore, most reported p...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8904892/ https://www.ncbi.nlm.nih.gov/pubmed/35280897 http://dx.doi.org/10.3389/fmed.2022.846525 |
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author | Yamanaka, Syunsuke Morikawa, Koji Azuma, Hiroyuki Yamanaka, Maki Shimada, Yoshimitsu Wada, Toru Matano, Hideyuki Yamada, Naoki Yamamura, Osamu Hayashi, Hiroyuki |
author_facet | Yamanaka, Syunsuke Morikawa, Koji Azuma, Hiroyuki Yamanaka, Maki Shimada, Yoshimitsu Wada, Toru Matano, Hideyuki Yamada, Naoki Yamamura, Osamu Hayashi, Hiroyuki |
author_sort | Yamanaka, Syunsuke |
collection | PubMed |
description | BACKGROUND: Early prediction of oxygen therapy in patients with coronavirus disease 2019 (COVID-19) is vital for triage. Several machine-learning prognostic models for COVID-19 are currently available. However, external validation of these models has rarely been performed. Therefore, most reported predictive performance is optimistic and has a high risk of bias. This study aimed to develop and validate a model that predicts oxygen therapy needs in the early stages of COVID-19 using a sizable multicenter dataset. METHODS: This multicenter retrospective study included consecutive COVID-19 hospitalized patients confirmed by a reverse transcription chain reaction in 11 medical institutions in Fukui, Japan. We developed and validated seven machine-learning models (e.g., penalized logistic regression model) using routinely collected data (e.g., demographics, simple blood test). The primary outcome was the need for oxygen therapy (≥1 L/min or SpO(2) ≤ 94%) during hospitalization. C-statistics, calibration slope, and association measures (e.g., sensitivity) evaluated the performance of the model using the test set (randomly selected 20% of data for internal validation). Among these seven models, the machine-learning model that showed the best performance was re-evaluated using an external dataset. We compared the model performances using the A-DROP criteria (modified version of CURB-65) as a conventional method. RESULTS: Of the 396 patients with COVID-19 for the model development, 102 patients (26%) required oxygen therapy during hospitalization. For internal validation, machine-learning models, except for the k-point nearest neighbor, had a higher discrimination ability than the A-DORP criteria (P < 0.01). The XGboost had the highest c-statistic in the internal validation (0.92 vs. 0.69 in A-DROP criteria; P < 0.001). For the external validation with 728 temporal independent datasets (106 patients [15%] required oxygen therapy), the XG boost model had a higher c-statistic (0.88 vs. 0.69 in A-DROP criteria; P < 0.001). CONCLUSIONS: Machine-learning models demonstrated a more significant performance in predicting the need for oxygen therapy in the early stages of COVID-19. |
format | Online Article Text |
id | pubmed-8904892 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89048922022-03-10 Machine-Learning Approaches for Predicting the Need of Oxygen Therapy in Early-Stage COVID-19 in Japan: Multicenter Retrospective Observational Study Yamanaka, Syunsuke Morikawa, Koji Azuma, Hiroyuki Yamanaka, Maki Shimada, Yoshimitsu Wada, Toru Matano, Hideyuki Yamada, Naoki Yamamura, Osamu Hayashi, Hiroyuki Front Med (Lausanne) Medicine BACKGROUND: Early prediction of oxygen therapy in patients with coronavirus disease 2019 (COVID-19) is vital for triage. Several machine-learning prognostic models for COVID-19 are currently available. However, external validation of these models has rarely been performed. Therefore, most reported predictive performance is optimistic and has a high risk of bias. This study aimed to develop and validate a model that predicts oxygen therapy needs in the early stages of COVID-19 using a sizable multicenter dataset. METHODS: This multicenter retrospective study included consecutive COVID-19 hospitalized patients confirmed by a reverse transcription chain reaction in 11 medical institutions in Fukui, Japan. We developed and validated seven machine-learning models (e.g., penalized logistic regression model) using routinely collected data (e.g., demographics, simple blood test). The primary outcome was the need for oxygen therapy (≥1 L/min or SpO(2) ≤ 94%) during hospitalization. C-statistics, calibration slope, and association measures (e.g., sensitivity) evaluated the performance of the model using the test set (randomly selected 20% of data for internal validation). Among these seven models, the machine-learning model that showed the best performance was re-evaluated using an external dataset. We compared the model performances using the A-DROP criteria (modified version of CURB-65) as a conventional method. RESULTS: Of the 396 patients with COVID-19 for the model development, 102 patients (26%) required oxygen therapy during hospitalization. For internal validation, machine-learning models, except for the k-point nearest neighbor, had a higher discrimination ability than the A-DORP criteria (P < 0.01). The XGboost had the highest c-statistic in the internal validation (0.92 vs. 0.69 in A-DROP criteria; P < 0.001). For the external validation with 728 temporal independent datasets (106 patients [15%] required oxygen therapy), the XG boost model had a higher c-statistic (0.88 vs. 0.69 in A-DROP criteria; P < 0.001). CONCLUSIONS: Machine-learning models demonstrated a more significant performance in predicting the need for oxygen therapy in the early stages of COVID-19. Frontiers Media S.A. 2022-02-23 /pmc/articles/PMC8904892/ /pubmed/35280897 http://dx.doi.org/10.3389/fmed.2022.846525 Text en Copyright © 2022 Yamanaka, Morikawa, Azuma, Yamanaka, Shimada, Wada, Matano, Yamada, Yamamura and Hayashi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Yamanaka, Syunsuke Morikawa, Koji Azuma, Hiroyuki Yamanaka, Maki Shimada, Yoshimitsu Wada, Toru Matano, Hideyuki Yamada, Naoki Yamamura, Osamu Hayashi, Hiroyuki Machine-Learning Approaches for Predicting the Need of Oxygen Therapy in Early-Stage COVID-19 in Japan: Multicenter Retrospective Observational Study |
title | Machine-Learning Approaches for Predicting the Need of Oxygen Therapy in Early-Stage COVID-19 in Japan: Multicenter Retrospective Observational Study |
title_full | Machine-Learning Approaches for Predicting the Need of Oxygen Therapy in Early-Stage COVID-19 in Japan: Multicenter Retrospective Observational Study |
title_fullStr | Machine-Learning Approaches for Predicting the Need of Oxygen Therapy in Early-Stage COVID-19 in Japan: Multicenter Retrospective Observational Study |
title_full_unstemmed | Machine-Learning Approaches for Predicting the Need of Oxygen Therapy in Early-Stage COVID-19 in Japan: Multicenter Retrospective Observational Study |
title_short | Machine-Learning Approaches for Predicting the Need of Oxygen Therapy in Early-Stage COVID-19 in Japan: Multicenter Retrospective Observational Study |
title_sort | machine-learning approaches for predicting the need of oxygen therapy in early-stage covid-19 in japan: multicenter retrospective observational study |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8904892/ https://www.ncbi.nlm.nih.gov/pubmed/35280897 http://dx.doi.org/10.3389/fmed.2022.846525 |
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