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MODIT: MOtif DIscovery in Temporal Networks
Temporal networks are graphs where each edge is linked with a timestamp, denoting when an interaction between two nodes happens. According to the most recently proposed definitions of the problem, motif search in temporal networks consists in finding and counting all connected temporal graphs Q (cal...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8905430/ https://www.ncbi.nlm.nih.gov/pubmed/35281988 http://dx.doi.org/10.3389/fdata.2021.806014 |
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author | Grasso, Roberto Micale, Giovanni Ferro, Alfredo Pulvirenti, Alfredo |
author_facet | Grasso, Roberto Micale, Giovanni Ferro, Alfredo Pulvirenti, Alfredo |
author_sort | Grasso, Roberto |
collection | PubMed |
description | Temporal networks are graphs where each edge is linked with a timestamp, denoting when an interaction between two nodes happens. According to the most recently proposed definitions of the problem, motif search in temporal networks consists in finding and counting all connected temporal graphs Q (called motifs) occurring in a larger temporal network T, such that matched target edges follow the same chronological order imposed by edges in Q. In the last few years, several algorithms have been proposed to solve motif search, but most of them are limited to very small or specific motifs due to the computational complexity of the problem. In this paper, we present MODIT (MOtif DIscovery in Temporal Networks), an algorithm for counting motifs of any size in temporal networks, inspired by a very recent algorithm for subgraph isomorphism in temporal networks, called TemporalRI. Experiments show that for big motifs (more than 3 nodes and 3 edges) MODIT can efficiently retrieve them in reasonable time (up to few hours) in many networks of medium and large size and outperforms state-of-the art algorithms. |
format | Online Article Text |
id | pubmed-8905430 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89054302022-03-10 MODIT: MOtif DIscovery in Temporal Networks Grasso, Roberto Micale, Giovanni Ferro, Alfredo Pulvirenti, Alfredo Front Big Data Big Data Temporal networks are graphs where each edge is linked with a timestamp, denoting when an interaction between two nodes happens. According to the most recently proposed definitions of the problem, motif search in temporal networks consists in finding and counting all connected temporal graphs Q (called motifs) occurring in a larger temporal network T, such that matched target edges follow the same chronological order imposed by edges in Q. In the last few years, several algorithms have been proposed to solve motif search, but most of them are limited to very small or specific motifs due to the computational complexity of the problem. In this paper, we present MODIT (MOtif DIscovery in Temporal Networks), an algorithm for counting motifs of any size in temporal networks, inspired by a very recent algorithm for subgraph isomorphism in temporal networks, called TemporalRI. Experiments show that for big motifs (more than 3 nodes and 3 edges) MODIT can efficiently retrieve them in reasonable time (up to few hours) in many networks of medium and large size and outperforms state-of-the art algorithms. Frontiers Media S.A. 2022-02-23 /pmc/articles/PMC8905430/ /pubmed/35281988 http://dx.doi.org/10.3389/fdata.2021.806014 Text en Copyright © 2022 Grasso, Micale, Ferro and Pulvirenti. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Big Data Grasso, Roberto Micale, Giovanni Ferro, Alfredo Pulvirenti, Alfredo MODIT: MOtif DIscovery in Temporal Networks |
title | MODIT: MOtif DIscovery in Temporal Networks |
title_full | MODIT: MOtif DIscovery in Temporal Networks |
title_fullStr | MODIT: MOtif DIscovery in Temporal Networks |
title_full_unstemmed | MODIT: MOtif DIscovery in Temporal Networks |
title_short | MODIT: MOtif DIscovery in Temporal Networks |
title_sort | modit: motif discovery in temporal networks |
topic | Big Data |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8905430/ https://www.ncbi.nlm.nih.gov/pubmed/35281988 http://dx.doi.org/10.3389/fdata.2021.806014 |
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