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Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia
Accurate and realistic simulation of high-dimensional medical images has become an important research area relevant to many AI-enabled healthcare applications. However, current state-of-the-art approaches lack the ability to produce satisfactory high-resolution and accurate subject-specific images....
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8907865/ https://www.ncbi.nlm.nih.gov/pubmed/34731771 http://dx.doi.org/10.1016/j.media.2021.102257 |
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author | Ravi, Daniele Blumberg, Stefano B. Ingala, Silvia Barkhof, Frederik Alexander, Daniel C. Oxtoby, Neil P. |
author_facet | Ravi, Daniele Blumberg, Stefano B. Ingala, Silvia Barkhof, Frederik Alexander, Daniel C. Oxtoby, Neil P. |
author_sort | Ravi, Daniele |
collection | PubMed |
description | Accurate and realistic simulation of high-dimensional medical images has become an important research area relevant to many AI-enabled healthcare applications. However, current state-of-the-art approaches lack the ability to produce satisfactory high-resolution and accurate subject-specific images. In this work, we present a deep learning framework, namely 4D-Degenerative Adversarial NeuroImage Net (4D-DANI-Net), to generate high-resolution, longitudinal MRI scans that mimic subject-specific neurodegeneration in ageing and dementia. 4D-DANI-Net is a modular framework based on adversarial training and a set of novel spatiotemporal, biologically-informed constraints. To ensure efficient training and overcome memory limitations affecting such high-dimensional problems, we rely on three key technological advances: i) a new 3D training consistency mechanism called Profile Weight Functions (PWFs), ii) a 3D super-resolution module and iii) a transfer learning strategy to fine-tune the system for a given individual. To evaluate our approach, we trained the framework on 9852 T1-weighted MRI scans from 876 participants in the Alzheimer’s Disease Neuroimaging Initiative dataset and held out a separate test set of 1283 MRI scans from 170 participants for quantitative and qualitative assessment of the personalised time series of synthetic images. We performed three evaluations: i) image quality assessment; ii) quantifying the accuracy of regional brain volumes over and above benchmark models; and iii) quantifying visual perception of the synthetic images by medical experts. Overall, both quantitative and qualitative results show that 4D-DANI-Net produces realistic, low-artefact, personalised time series of synthetic T1 MRI that outperforms benchmark models. |
format | Online Article Text |
id | pubmed-8907865 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-89078652022-03-15 Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia Ravi, Daniele Blumberg, Stefano B. Ingala, Silvia Barkhof, Frederik Alexander, Daniel C. Oxtoby, Neil P. Med Image Anal Article Accurate and realistic simulation of high-dimensional medical images has become an important research area relevant to many AI-enabled healthcare applications. However, current state-of-the-art approaches lack the ability to produce satisfactory high-resolution and accurate subject-specific images. In this work, we present a deep learning framework, namely 4D-Degenerative Adversarial NeuroImage Net (4D-DANI-Net), to generate high-resolution, longitudinal MRI scans that mimic subject-specific neurodegeneration in ageing and dementia. 4D-DANI-Net is a modular framework based on adversarial training and a set of novel spatiotemporal, biologically-informed constraints. To ensure efficient training and overcome memory limitations affecting such high-dimensional problems, we rely on three key technological advances: i) a new 3D training consistency mechanism called Profile Weight Functions (PWFs), ii) a 3D super-resolution module and iii) a transfer learning strategy to fine-tune the system for a given individual. To evaluate our approach, we trained the framework on 9852 T1-weighted MRI scans from 876 participants in the Alzheimer’s Disease Neuroimaging Initiative dataset and held out a separate test set of 1283 MRI scans from 170 participants for quantitative and qualitative assessment of the personalised time series of synthetic images. We performed three evaluations: i) image quality assessment; ii) quantifying the accuracy of regional brain volumes over and above benchmark models; and iii) quantifying visual perception of the synthetic images by medical experts. Overall, both quantitative and qualitative results show that 4D-DANI-Net produces realistic, low-artefact, personalised time series of synthetic T1 MRI that outperforms benchmark models. Elsevier 2022-01 /pmc/articles/PMC8907865/ /pubmed/34731771 http://dx.doi.org/10.1016/j.media.2021.102257 Text en Crown Copyright © 2021 Published by Elsevier B.V. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ravi, Daniele Blumberg, Stefano B. Ingala, Silvia Barkhof, Frederik Alexander, Daniel C. Oxtoby, Neil P. Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia |
title | Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia |
title_full | Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia |
title_fullStr | Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia |
title_full_unstemmed | Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia |
title_short | Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia |
title_sort | degenerative adversarial neuroimage nets for brain scan simulations: application in ageing and dementia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8907865/ https://www.ncbi.nlm.nih.gov/pubmed/34731771 http://dx.doi.org/10.1016/j.media.2021.102257 |
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