Cargando…

Using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of Wuyao-Danshen to treat endometriosis

BACKGROUND: This study sought to explore the anti-inflammatory mechanism of Wuyao (radix linderae)–Danshen (salviae miltiorrhiza) in endometriosis (EMS) based on network pharmacology and molecular docking. METHODS: The active constituents of Wuyao-Danshen were collected and identified using the Trad...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhu, Jie, Xue, Xiaoou, He, Zhiping, Zhang, Jiawei, Sun, Haiyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8908112/
https://www.ncbi.nlm.nih.gov/pubmed/35280377
http://dx.doi.org/10.21037/atm-22-419
_version_ 1784665804954927104
author Zhu, Jie
Xue, Xiaoou
He, Zhiping
Zhang, Jiawei
Sun, Haiyun
author_facet Zhu, Jie
Xue, Xiaoou
He, Zhiping
Zhang, Jiawei
Sun, Haiyun
author_sort Zhu, Jie
collection PubMed
description BACKGROUND: This study sought to explore the anti-inflammatory mechanism of Wuyao (radix linderae)–Danshen (salviae miltiorrhiza) in endometriosis (EMS) based on network pharmacology and molecular docking. METHODS: The active constituents of Wuyao-Danshen were collected and identified using the Traditional Chinese Medicine Systems Pharmacology Database, and used to predict and identify the protein targets. The EMS targets and anti-inflammatory targets were obtained from Genecards, Online Mendelian Inheritance in Man, and Drugbank. The Search Tool for the Retrieval of Interacting Genes/Proteins database was used to analyze the protein interactions (PPIs) and core targets, and a target PPI network was constructed by importing the software of Cytoscape. The Metascape database was used to conduct enrichment analyses of the Gene Ontology (GO) functions and the Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathways for the key anti-inflammatory targets of EMS. Finally, Autodock Vina software was used to verify the results of the active ingredients and key anti-inflammatory targets. RESULTS: There were 8 active components in Wuyao, 65 in Danshen, and 591 corresponding protein targets in Danshen, and 375 in Wuyao, including luteolin, quercetin, vancomyl alcohol, and salvianol. One thousand and six hundred eighty-nine disease targets, 1,216 anti-inflammatory targets, and 144 key anti-inflammatory targets were identified, including the (signal transduction and transcriptional activator 3) STAT3, phosphatidyl inositol-3 kinase regulates subunit 1 (PIK3R1) and mitogen-activated protein kinase 1 (MAPK1) protein kinase B. Three hundred and fifty-three biological processes (BPs), 21 cellular components, and 25 molecular functions (MFs) were enriched with GO functions, and 108 KEGG pathways were enriched and analyzed, including the MAPK and PI3K-Akt signaling pathways. Molecular docking confirmed that luteolin, coumarin, and quercetin could bind to the key target proteins (i.e., STAT3, PIK3R1, and MAPK1). CONCLUSIONS: Based on network pharmacology and molecular docking, Wuyao-Danshen was found to act on EMS through anti-inflammatory targets and related signaling pathways. Our findings provide a basis for further research.
format Online
Article
Text
id pubmed-8908112
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher AME Publishing Company
record_format MEDLINE/PubMed
spelling pubmed-89081122022-03-11 Using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of Wuyao-Danshen to treat endometriosis Zhu, Jie Xue, Xiaoou He, Zhiping Zhang, Jiawei Sun, Haiyun Ann Transl Med Original Article BACKGROUND: This study sought to explore the anti-inflammatory mechanism of Wuyao (radix linderae)–Danshen (salviae miltiorrhiza) in endometriosis (EMS) based on network pharmacology and molecular docking. METHODS: The active constituents of Wuyao-Danshen were collected and identified using the Traditional Chinese Medicine Systems Pharmacology Database, and used to predict and identify the protein targets. The EMS targets and anti-inflammatory targets were obtained from Genecards, Online Mendelian Inheritance in Man, and Drugbank. The Search Tool for the Retrieval of Interacting Genes/Proteins database was used to analyze the protein interactions (PPIs) and core targets, and a target PPI network was constructed by importing the software of Cytoscape. The Metascape database was used to conduct enrichment analyses of the Gene Ontology (GO) functions and the Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathways for the key anti-inflammatory targets of EMS. Finally, Autodock Vina software was used to verify the results of the active ingredients and key anti-inflammatory targets. RESULTS: There were 8 active components in Wuyao, 65 in Danshen, and 591 corresponding protein targets in Danshen, and 375 in Wuyao, including luteolin, quercetin, vancomyl alcohol, and salvianol. One thousand and six hundred eighty-nine disease targets, 1,216 anti-inflammatory targets, and 144 key anti-inflammatory targets were identified, including the (signal transduction and transcriptional activator 3) STAT3, phosphatidyl inositol-3 kinase regulates subunit 1 (PIK3R1) and mitogen-activated protein kinase 1 (MAPK1) protein kinase B. Three hundred and fifty-three biological processes (BPs), 21 cellular components, and 25 molecular functions (MFs) were enriched with GO functions, and 108 KEGG pathways were enriched and analyzed, including the MAPK and PI3K-Akt signaling pathways. Molecular docking confirmed that luteolin, coumarin, and quercetin could bind to the key target proteins (i.e., STAT3, PIK3R1, and MAPK1). CONCLUSIONS: Based on network pharmacology and molecular docking, Wuyao-Danshen was found to act on EMS through anti-inflammatory targets and related signaling pathways. Our findings provide a basis for further research. AME Publishing Company 2022-02 /pmc/articles/PMC8908112/ /pubmed/35280377 http://dx.doi.org/10.21037/atm-22-419 Text en 2022 Annals of Translational Medicine. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Zhu, Jie
Xue, Xiaoou
He, Zhiping
Zhang, Jiawei
Sun, Haiyun
Using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of Wuyao-Danshen to treat endometriosis
title Using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of Wuyao-Danshen to treat endometriosis
title_full Using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of Wuyao-Danshen to treat endometriosis
title_fullStr Using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of Wuyao-Danshen to treat endometriosis
title_full_unstemmed Using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of Wuyao-Danshen to treat endometriosis
title_short Using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of Wuyao-Danshen to treat endometriosis
title_sort using network pharmacology and molecular docking to explore the underlying anti-inflammatory mechanism of wuyao-danshen to treat endometriosis
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8908112/
https://www.ncbi.nlm.nih.gov/pubmed/35280377
http://dx.doi.org/10.21037/atm-22-419
work_keys_str_mv AT zhujie usingnetworkpharmacologyandmoleculardockingtoexploretheunderlyingantiinflammatorymechanismofwuyaodanshentotreatendometriosis
AT xuexiaoou usingnetworkpharmacologyandmoleculardockingtoexploretheunderlyingantiinflammatorymechanismofwuyaodanshentotreatendometriosis
AT hezhiping usingnetworkpharmacologyandmoleculardockingtoexploretheunderlyingantiinflammatorymechanismofwuyaodanshentotreatendometriosis
AT zhangjiawei usingnetworkpharmacologyandmoleculardockingtoexploretheunderlyingantiinflammatorymechanismofwuyaodanshentotreatendometriosis
AT sunhaiyun usingnetworkpharmacologyandmoleculardockingtoexploretheunderlyingantiinflammatorymechanismofwuyaodanshentotreatendometriosis