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Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma

BACKGROUND: Immune-related genes (IRGs) play an important role in the tumor immune microenvironment and affect tumor prognosis. This study aimed to establish a prognostic signature for malignant pleural mesothelioma (MPM) patients. METHODS: We obtained the relevant data of MPM patients in The Cancer...

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Autores principales: Zhang, Xiangxin, Huang, Xiangdong, Wang, Zhexin, Zhang, Kejian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8908124/
https://www.ncbi.nlm.nih.gov/pubmed/35280360
http://dx.doi.org/10.21037/atm-22-527
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author Zhang, Xiangxin
Huang, Xiangdong
Wang, Zhexin
Zhang, Kejian
author_facet Zhang, Xiangxin
Huang, Xiangdong
Wang, Zhexin
Zhang, Kejian
author_sort Zhang, Xiangxin
collection PubMed
description BACKGROUND: Immune-related genes (IRGs) play an important role in the tumor immune microenvironment and affect tumor prognosis. This study aimed to establish a prognostic signature for malignant pleural mesothelioma (MPM) patients. METHODS: We obtained the relevant data of MPM patients in The Cancer Genome Atlas (TCGA), and univariate and multivariate Cox regression were used to construct the prediction signature and verify it with the external validation dataset GSE2549. A nomogram was then constructed, and its predictive ability was evaluated and analyzed the level of immune cell infiltration in different groups in the signature. RESULTS: An IRG-related prognostic signature composed of INHBA, CAT, SORT1, TNFSF13B, and BIRC5 was constructed, with patients divided into high-risk and low-risk groups according to the risk score. The survival time of overall survival (OS), progression-free survival (PFS), disease-free interval (DFI), and relapse-free survival (RFS) in low-risk groups was longer than in high-risk groups. Furthermore, the signature had high predictive performance, and the receiver operating characteristic (ROC) of 1, 2, and 3 years could reach 0.853, 0.881, and 0.914, respectively. The predictive accuracy of the signature was verified by using the independent GSE2549 dataset. The levels of activated CD4 T cells, immature dendritic cells, and type 2 T helper cells were higher in high-risk patients. The gene set enrichment analysis (GSEA) analysis showed that a high concentration and P53 signal pathways were found in high-risk groups. CONCLUSIONS: This research developed and verified a new type of immune prognostic signature based on five IRGs, which can predict the prognosis of tumor patients and provide new ideas for individualized treatment.
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spelling pubmed-89081242022-03-11 Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma Zhang, Xiangxin Huang, Xiangdong Wang, Zhexin Zhang, Kejian Ann Transl Med Original Article BACKGROUND: Immune-related genes (IRGs) play an important role in the tumor immune microenvironment and affect tumor prognosis. This study aimed to establish a prognostic signature for malignant pleural mesothelioma (MPM) patients. METHODS: We obtained the relevant data of MPM patients in The Cancer Genome Atlas (TCGA), and univariate and multivariate Cox regression were used to construct the prediction signature and verify it with the external validation dataset GSE2549. A nomogram was then constructed, and its predictive ability was evaluated and analyzed the level of immune cell infiltration in different groups in the signature. RESULTS: An IRG-related prognostic signature composed of INHBA, CAT, SORT1, TNFSF13B, and BIRC5 was constructed, with patients divided into high-risk and low-risk groups according to the risk score. The survival time of overall survival (OS), progression-free survival (PFS), disease-free interval (DFI), and relapse-free survival (RFS) in low-risk groups was longer than in high-risk groups. Furthermore, the signature had high predictive performance, and the receiver operating characteristic (ROC) of 1, 2, and 3 years could reach 0.853, 0.881, and 0.914, respectively. The predictive accuracy of the signature was verified by using the independent GSE2549 dataset. The levels of activated CD4 T cells, immature dendritic cells, and type 2 T helper cells were higher in high-risk patients. The gene set enrichment analysis (GSEA) analysis showed that a high concentration and P53 signal pathways were found in high-risk groups. CONCLUSIONS: This research developed and verified a new type of immune prognostic signature based on five IRGs, which can predict the prognosis of tumor patients and provide new ideas for individualized treatment. AME Publishing Company 2022-02 /pmc/articles/PMC8908124/ /pubmed/35280360 http://dx.doi.org/10.21037/atm-22-527 Text en 2022 Annals of Translational Medicine. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Zhang, Xiangxin
Huang, Xiangdong
Wang, Zhexin
Zhang, Kejian
Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma
title Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma
title_full Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma
title_fullStr Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma
title_full_unstemmed Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma
title_short Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma
title_sort establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8908124/
https://www.ncbi.nlm.nih.gov/pubmed/35280360
http://dx.doi.org/10.21037/atm-22-527
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