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THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation
Hepatocellular carcinoma (HCC) is the most common malignant liver tumor with high mortality and poor prognosis worldwide. This study aimed to identify hub genes and investigate the underlying molecular mechanisms in HCC progression by integrated bioinformatics analysis and experimental validation. B...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8908915/ https://www.ncbi.nlm.nih.gov/pubmed/35196258 http://dx.doi.org/10.18632/aging.203900 |
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author | Ding, Yuxi Liu, Xiaoling Yuan, Yue Sheng, Yunjian Li, Decheng Ojha, Suvash Chandra Sun, Changfeng Deng, Cunliang |
author_facet | Ding, Yuxi Liu, Xiaoling Yuan, Yue Sheng, Yunjian Li, Decheng Ojha, Suvash Chandra Sun, Changfeng Deng, Cunliang |
author_sort | Ding, Yuxi |
collection | PubMed |
description | Hepatocellular carcinoma (HCC) is the most common malignant liver tumor with high mortality and poor prognosis worldwide. This study aimed to identify hub genes and investigate the underlying molecular mechanisms in HCC progression by integrated bioinformatics analysis and experimental validation. Based on the Gene Expression Omnibus (GEO) databases and The Cancer Genome Atlas (TCGA), 12 critical differential co-expression genes were identified between tumor and normal tissues. Via survival analysis, we found higher expression of LCAT, ACSM3, IGF1, SRD5A2, THRSP and ACADS was associated with better prognoses in HCC patients. Among which, THRSP was selected for the next investigations. We found that THRSP mRNA expression was negatively correlated with its methylation and closely associated with clinical characteristics in HCC patients. Moreover, THRSP expression had a negative correlation with the infiltration levels of several immune cells (e.g., B cells and CD4+ T cells). qRT-PCR verified that THRSP was lower expressed in HCC tissues and cell lines compared with control. Silencing of THRSP promoted the migration, invasion, proliferation, and inhibited cell apoptosis of HCCLM and Huh7 cell lines. Decreased expression of THRSP promoted HCC progression by NF-κB, ERK1/2, and p38 MAPK signaling pathways. In conclusion, THRSP might serve as a novel biomarker and therapeutic target of HCC. |
format | Online Article Text |
id | pubmed-8908915 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-89089152022-03-11 THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation Ding, Yuxi Liu, Xiaoling Yuan, Yue Sheng, Yunjian Li, Decheng Ojha, Suvash Chandra Sun, Changfeng Deng, Cunliang Aging (Albany NY) Research Paper Hepatocellular carcinoma (HCC) is the most common malignant liver tumor with high mortality and poor prognosis worldwide. This study aimed to identify hub genes and investigate the underlying molecular mechanisms in HCC progression by integrated bioinformatics analysis and experimental validation. Based on the Gene Expression Omnibus (GEO) databases and The Cancer Genome Atlas (TCGA), 12 critical differential co-expression genes were identified between tumor and normal tissues. Via survival analysis, we found higher expression of LCAT, ACSM3, IGF1, SRD5A2, THRSP and ACADS was associated with better prognoses in HCC patients. Among which, THRSP was selected for the next investigations. We found that THRSP mRNA expression was negatively correlated with its methylation and closely associated with clinical characteristics in HCC patients. Moreover, THRSP expression had a negative correlation with the infiltration levels of several immune cells (e.g., B cells and CD4+ T cells). qRT-PCR verified that THRSP was lower expressed in HCC tissues and cell lines compared with control. Silencing of THRSP promoted the migration, invasion, proliferation, and inhibited cell apoptosis of HCCLM and Huh7 cell lines. Decreased expression of THRSP promoted HCC progression by NF-κB, ERK1/2, and p38 MAPK signaling pathways. In conclusion, THRSP might serve as a novel biomarker and therapeutic target of HCC. Impact Journals 2022-02-23 /pmc/articles/PMC8908915/ /pubmed/35196258 http://dx.doi.org/10.18632/aging.203900 Text en Copyright: © 2022 Ding et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Ding, Yuxi Liu, Xiaoling Yuan, Yue Sheng, Yunjian Li, Decheng Ojha, Suvash Chandra Sun, Changfeng Deng, Cunliang THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation |
title | THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation |
title_full | THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation |
title_fullStr | THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation |
title_full_unstemmed | THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation |
title_short | THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation |
title_sort | thrsp identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8908915/ https://www.ncbi.nlm.nih.gov/pubmed/35196258 http://dx.doi.org/10.18632/aging.203900 |
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