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THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation

Hepatocellular carcinoma (HCC) is the most common malignant liver tumor with high mortality and poor prognosis worldwide. This study aimed to identify hub genes and investigate the underlying molecular mechanisms in HCC progression by integrated bioinformatics analysis and experimental validation. B...

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Autores principales: Ding, Yuxi, Liu, Xiaoling, Yuan, Yue, Sheng, Yunjian, Li, Decheng, Ojha, Suvash Chandra, Sun, Changfeng, Deng, Cunliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8908915/
https://www.ncbi.nlm.nih.gov/pubmed/35196258
http://dx.doi.org/10.18632/aging.203900
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author Ding, Yuxi
Liu, Xiaoling
Yuan, Yue
Sheng, Yunjian
Li, Decheng
Ojha, Suvash Chandra
Sun, Changfeng
Deng, Cunliang
author_facet Ding, Yuxi
Liu, Xiaoling
Yuan, Yue
Sheng, Yunjian
Li, Decheng
Ojha, Suvash Chandra
Sun, Changfeng
Deng, Cunliang
author_sort Ding, Yuxi
collection PubMed
description Hepatocellular carcinoma (HCC) is the most common malignant liver tumor with high mortality and poor prognosis worldwide. This study aimed to identify hub genes and investigate the underlying molecular mechanisms in HCC progression by integrated bioinformatics analysis and experimental validation. Based on the Gene Expression Omnibus (GEO) databases and The Cancer Genome Atlas (TCGA), 12 critical differential co-expression genes were identified between tumor and normal tissues. Via survival analysis, we found higher expression of LCAT, ACSM3, IGF1, SRD5A2, THRSP and ACADS was associated with better prognoses in HCC patients. Among which, THRSP was selected for the next investigations. We found that THRSP mRNA expression was negatively correlated with its methylation and closely associated with clinical characteristics in HCC patients. Moreover, THRSP expression had a negative correlation with the infiltration levels of several immune cells (e.g., B cells and CD4+ T cells). qRT-PCR verified that THRSP was lower expressed in HCC tissues and cell lines compared with control. Silencing of THRSP promoted the migration, invasion, proliferation, and inhibited cell apoptosis of HCCLM and Huh7 cell lines. Decreased expression of THRSP promoted HCC progression by NF-κB, ERK1/2, and p38 MAPK signaling pathways. In conclusion, THRSP might serve as a novel biomarker and therapeutic target of HCC.
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spelling pubmed-89089152022-03-11 THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation Ding, Yuxi Liu, Xiaoling Yuan, Yue Sheng, Yunjian Li, Decheng Ojha, Suvash Chandra Sun, Changfeng Deng, Cunliang Aging (Albany NY) Research Paper Hepatocellular carcinoma (HCC) is the most common malignant liver tumor with high mortality and poor prognosis worldwide. This study aimed to identify hub genes and investigate the underlying molecular mechanisms in HCC progression by integrated bioinformatics analysis and experimental validation. Based on the Gene Expression Omnibus (GEO) databases and The Cancer Genome Atlas (TCGA), 12 critical differential co-expression genes were identified between tumor and normal tissues. Via survival analysis, we found higher expression of LCAT, ACSM3, IGF1, SRD5A2, THRSP and ACADS was associated with better prognoses in HCC patients. Among which, THRSP was selected for the next investigations. We found that THRSP mRNA expression was negatively correlated with its methylation and closely associated with clinical characteristics in HCC patients. Moreover, THRSP expression had a negative correlation with the infiltration levels of several immune cells (e.g., B cells and CD4+ T cells). qRT-PCR verified that THRSP was lower expressed in HCC tissues and cell lines compared with control. Silencing of THRSP promoted the migration, invasion, proliferation, and inhibited cell apoptosis of HCCLM and Huh7 cell lines. Decreased expression of THRSP promoted HCC progression by NF-κB, ERK1/2, and p38 MAPK signaling pathways. In conclusion, THRSP might serve as a novel biomarker and therapeutic target of HCC. Impact Journals 2022-02-23 /pmc/articles/PMC8908915/ /pubmed/35196258 http://dx.doi.org/10.18632/aging.203900 Text en Copyright: © 2022 Ding et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Ding, Yuxi
Liu, Xiaoling
Yuan, Yue
Sheng, Yunjian
Li, Decheng
Ojha, Suvash Chandra
Sun, Changfeng
Deng, Cunliang
THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation
title THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation
title_full THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation
title_fullStr THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation
title_full_unstemmed THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation
title_short THRSP identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation
title_sort thrsp identified as a potential hepatocellular carcinoma marker by integrated bioinformatics analysis and experimental validation
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8908915/
https://www.ncbi.nlm.nih.gov/pubmed/35196258
http://dx.doi.org/10.18632/aging.203900
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