Cargando…
Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny
The enhanced understanding of chloroplast genomics would facilitate various biotechnology applications; however, the chloroplast (cp) genome / plastome characteristics of plants like Fagonia indica Burm.f. (family Zygophyllaceae), which have the capability to grow in extremely hot sand desert, have...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8913386/ https://www.ncbi.nlm.nih.gov/pubmed/35280582 http://dx.doi.org/10.1016/j.sjbs.2021.11.011 |
_version_ | 1784667426808397824 |
---|---|
author | Elshikh, Mohamed S. Ajmal Ali, Mohammad Al-Hemaid, Fahad Yong Kim, Soo Elangbam, Meena Bahadur Gurung, Arun Mukherjee, Prasanjit El-Zaidy, Mohamed Lee, Joongku |
author_facet | Elshikh, Mohamed S. Ajmal Ali, Mohammad Al-Hemaid, Fahad Yong Kim, Soo Elangbam, Meena Bahadur Gurung, Arun Mukherjee, Prasanjit El-Zaidy, Mohamed Lee, Joongku |
author_sort | Elshikh, Mohamed S. |
collection | PubMed |
description | The enhanced understanding of chloroplast genomics would facilitate various biotechnology applications; however, the chloroplast (cp) genome / plastome characteristics of plants like Fagonia indica Burm.f. (family Zygophyllaceae), which have the capability to grow in extremely hot sand desert, have been rarely understood. The de novo genome sequence of F. indica using the Illumina high-throughput sequencing technology determined 128,379 bp long cp genome, encode 115 unique coding genes. The present study added the evidence of the loss of a copy of the IR in the cp genome of the taxa capable to grow in the hot sand desert. The maximum likelihood analysis revealed two distinct sub-clades i.e. Krameriaceae and Zygophyllaceae of the order Zygophyllales, nested within fabids. |
format | Online Article Text |
id | pubmed-8913386 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-89133862022-03-12 Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny Elshikh, Mohamed S. Ajmal Ali, Mohammad Al-Hemaid, Fahad Yong Kim, Soo Elangbam, Meena Bahadur Gurung, Arun Mukherjee, Prasanjit El-Zaidy, Mohamed Lee, Joongku Saudi J Biol Sci Original Article The enhanced understanding of chloroplast genomics would facilitate various biotechnology applications; however, the chloroplast (cp) genome / plastome characteristics of plants like Fagonia indica Burm.f. (family Zygophyllaceae), which have the capability to grow in extremely hot sand desert, have been rarely understood. The de novo genome sequence of F. indica using the Illumina high-throughput sequencing technology determined 128,379 bp long cp genome, encode 115 unique coding genes. The present study added the evidence of the loss of a copy of the IR in the cp genome of the taxa capable to grow in the hot sand desert. The maximum likelihood analysis revealed two distinct sub-clades i.e. Krameriaceae and Zygophyllaceae of the order Zygophyllales, nested within fabids. Elsevier 2022-03 2021-11-12 /pmc/articles/PMC8913386/ /pubmed/35280582 http://dx.doi.org/10.1016/j.sjbs.2021.11.011 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Original Article Elshikh, Mohamed S. Ajmal Ali, Mohammad Al-Hemaid, Fahad Yong Kim, Soo Elangbam, Meena Bahadur Gurung, Arun Mukherjee, Prasanjit El-Zaidy, Mohamed Lee, Joongku Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny |
title | Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny |
title_full | Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny |
title_fullStr | Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny |
title_full_unstemmed | Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny |
title_short | Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny |
title_sort | insights into plastome of fagonia indica burm.f. (zygophyllaceae): organization, annotation and phylogeny |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8913386/ https://www.ncbi.nlm.nih.gov/pubmed/35280582 http://dx.doi.org/10.1016/j.sjbs.2021.11.011 |
work_keys_str_mv | AT elshikhmohameds insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny AT ajmalalimohammad insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny AT alhemaidfahad insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny AT yongkimsoo insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny AT elangbammeena insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny AT bahadurgurungarun insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny AT mukherjeeprasanjit insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny AT elzaidymohamed insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny AT leejoongku insightsintoplastomeoffagoniaindicaburmfzygophyllaceaeorganizationannotationandphylogeny |