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Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny

The enhanced understanding of chloroplast genomics would facilitate various biotechnology applications; however, the chloroplast (cp) genome / plastome characteristics of plants like Fagonia indica Burm.f. (family Zygophyllaceae), which have the capability to grow in extremely hot sand desert, have...

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Autores principales: Elshikh, Mohamed S., Ajmal Ali, Mohammad, Al-Hemaid, Fahad, Yong Kim, Soo, Elangbam, Meena, Bahadur Gurung, Arun, Mukherjee, Prasanjit, El-Zaidy, Mohamed, Lee, Joongku
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8913386/
https://www.ncbi.nlm.nih.gov/pubmed/35280582
http://dx.doi.org/10.1016/j.sjbs.2021.11.011
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author Elshikh, Mohamed S.
Ajmal Ali, Mohammad
Al-Hemaid, Fahad
Yong Kim, Soo
Elangbam, Meena
Bahadur Gurung, Arun
Mukherjee, Prasanjit
El-Zaidy, Mohamed
Lee, Joongku
author_facet Elshikh, Mohamed S.
Ajmal Ali, Mohammad
Al-Hemaid, Fahad
Yong Kim, Soo
Elangbam, Meena
Bahadur Gurung, Arun
Mukherjee, Prasanjit
El-Zaidy, Mohamed
Lee, Joongku
author_sort Elshikh, Mohamed S.
collection PubMed
description The enhanced understanding of chloroplast genomics would facilitate various biotechnology applications; however, the chloroplast (cp) genome / plastome characteristics of plants like Fagonia indica Burm.f. (family Zygophyllaceae), which have the capability to grow in extremely hot sand desert, have been rarely understood. The de novo genome sequence of F. indica using the Illumina high-throughput sequencing technology determined 128,379 bp long cp genome, encode 115 unique coding genes. The present study added the evidence of the loss of a copy of the IR in the cp genome of the taxa capable to grow in the hot sand desert. The maximum likelihood analysis revealed two distinct sub-clades i.e. Krameriaceae and Zygophyllaceae of the order Zygophyllales, nested within fabids.
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spelling pubmed-89133862022-03-12 Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny Elshikh, Mohamed S. Ajmal Ali, Mohammad Al-Hemaid, Fahad Yong Kim, Soo Elangbam, Meena Bahadur Gurung, Arun Mukherjee, Prasanjit El-Zaidy, Mohamed Lee, Joongku Saudi J Biol Sci Original Article The enhanced understanding of chloroplast genomics would facilitate various biotechnology applications; however, the chloroplast (cp) genome / plastome characteristics of plants like Fagonia indica Burm.f. (family Zygophyllaceae), which have the capability to grow in extremely hot sand desert, have been rarely understood. The de novo genome sequence of F. indica using the Illumina high-throughput sequencing technology determined 128,379 bp long cp genome, encode 115 unique coding genes. The present study added the evidence of the loss of a copy of the IR in the cp genome of the taxa capable to grow in the hot sand desert. The maximum likelihood analysis revealed two distinct sub-clades i.e. Krameriaceae and Zygophyllaceae of the order Zygophyllales, nested within fabids. Elsevier 2022-03 2021-11-12 /pmc/articles/PMC8913386/ /pubmed/35280582 http://dx.doi.org/10.1016/j.sjbs.2021.11.011 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Elshikh, Mohamed S.
Ajmal Ali, Mohammad
Al-Hemaid, Fahad
Yong Kim, Soo
Elangbam, Meena
Bahadur Gurung, Arun
Mukherjee, Prasanjit
El-Zaidy, Mohamed
Lee, Joongku
Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny
title Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny
title_full Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny
title_fullStr Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny
title_full_unstemmed Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny
title_short Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny
title_sort insights into plastome of fagonia indica burm.f. (zygophyllaceae): organization, annotation and phylogeny
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8913386/
https://www.ncbi.nlm.nih.gov/pubmed/35280582
http://dx.doi.org/10.1016/j.sjbs.2021.11.011
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