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Prediction of Neonatal Respiratory Distress Biomarker Concentration by Application of Machine Learning to Mid-Infrared Spectra

The authors of this study developed the use of attenuated total reflectance Fourier transform infrared spectroscopy (ATR–FTIR) combined with machine learning as a point-of-care (POC) diagnostic platform, considering neonatal respiratory distress syndrome (nRDS), for which no POC currently exists, as...

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Autores principales: Ahmed, Waseem, Veluthandath, Aneesh Vincent, Rowe, David J., Madsen, Jens, Clark, Howard W., Postle, Anthony D., Wilkinson, James S., Murugan, Ganapathy Senthil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8914945/
https://www.ncbi.nlm.nih.gov/pubmed/35270894
http://dx.doi.org/10.3390/s22051744
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author Ahmed, Waseem
Veluthandath, Aneesh Vincent
Rowe, David J.
Madsen, Jens
Clark, Howard W.
Postle, Anthony D.
Wilkinson, James S.
Murugan, Ganapathy Senthil
author_facet Ahmed, Waseem
Veluthandath, Aneesh Vincent
Rowe, David J.
Madsen, Jens
Clark, Howard W.
Postle, Anthony D.
Wilkinson, James S.
Murugan, Ganapathy Senthil
author_sort Ahmed, Waseem
collection PubMed
description The authors of this study developed the use of attenuated total reflectance Fourier transform infrared spectroscopy (ATR–FTIR) combined with machine learning as a point-of-care (POC) diagnostic platform, considering neonatal respiratory distress syndrome (nRDS), for which no POC currently exists, as an example. nRDS can be diagnosed by a ratio of less than 2.2 of two nRDS biomarkers, lecithin and sphingomyelin (L/S ratio), and in this study, ATR–FTIR spectra were recorded from L/S ratios of between 1.0 and 3.4, which were generated using purified reagents. The calibration of principal component (PCR) and partial least squares (PLSR) regression models was performed using 155 raw baselined and second derivative spectra prior to predicting the concentration of a further 104 spectra. A three-factor PLSR model of second derivative spectra best predicted L/S ratios across the full range (R(2): 0.967; MSE: 0.014). The L/S ratios from 1.0 to 3.4 were predicted with a prediction interval of +0.29, −0.37 when using a second derivative spectra PLSR model and had a mean prediction interval of +0.26, −0.34 around the L/S 2.2 region. These results support the validity of combining ATR–FTIR with machine learning to develop a point-of-care device for detecting and quantifying any biomarker with an interpretable mid-infrared spectrum.
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spelling pubmed-89149452022-03-12 Prediction of Neonatal Respiratory Distress Biomarker Concentration by Application of Machine Learning to Mid-Infrared Spectra Ahmed, Waseem Veluthandath, Aneesh Vincent Rowe, David J. Madsen, Jens Clark, Howard W. Postle, Anthony D. Wilkinson, James S. Murugan, Ganapathy Senthil Sensors (Basel) Article The authors of this study developed the use of attenuated total reflectance Fourier transform infrared spectroscopy (ATR–FTIR) combined with machine learning as a point-of-care (POC) diagnostic platform, considering neonatal respiratory distress syndrome (nRDS), for which no POC currently exists, as an example. nRDS can be diagnosed by a ratio of less than 2.2 of two nRDS biomarkers, lecithin and sphingomyelin (L/S ratio), and in this study, ATR–FTIR spectra were recorded from L/S ratios of between 1.0 and 3.4, which were generated using purified reagents. The calibration of principal component (PCR) and partial least squares (PLSR) regression models was performed using 155 raw baselined and second derivative spectra prior to predicting the concentration of a further 104 spectra. A three-factor PLSR model of second derivative spectra best predicted L/S ratios across the full range (R(2): 0.967; MSE: 0.014). The L/S ratios from 1.0 to 3.4 were predicted with a prediction interval of +0.29, −0.37 when using a second derivative spectra PLSR model and had a mean prediction interval of +0.26, −0.34 around the L/S 2.2 region. These results support the validity of combining ATR–FTIR with machine learning to develop a point-of-care device for detecting and quantifying any biomarker with an interpretable mid-infrared spectrum. MDPI 2022-02-23 /pmc/articles/PMC8914945/ /pubmed/35270894 http://dx.doi.org/10.3390/s22051744 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ahmed, Waseem
Veluthandath, Aneesh Vincent
Rowe, David J.
Madsen, Jens
Clark, Howard W.
Postle, Anthony D.
Wilkinson, James S.
Murugan, Ganapathy Senthil
Prediction of Neonatal Respiratory Distress Biomarker Concentration by Application of Machine Learning to Mid-Infrared Spectra
title Prediction of Neonatal Respiratory Distress Biomarker Concentration by Application of Machine Learning to Mid-Infrared Spectra
title_full Prediction of Neonatal Respiratory Distress Biomarker Concentration by Application of Machine Learning to Mid-Infrared Spectra
title_fullStr Prediction of Neonatal Respiratory Distress Biomarker Concentration by Application of Machine Learning to Mid-Infrared Spectra
title_full_unstemmed Prediction of Neonatal Respiratory Distress Biomarker Concentration by Application of Machine Learning to Mid-Infrared Spectra
title_short Prediction of Neonatal Respiratory Distress Biomarker Concentration by Application of Machine Learning to Mid-Infrared Spectra
title_sort prediction of neonatal respiratory distress biomarker concentration by application of machine learning to mid-infrared spectra
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8914945/
https://www.ncbi.nlm.nih.gov/pubmed/35270894
http://dx.doi.org/10.3390/s22051744
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