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Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges

Histopathology is widely used to analyze clinical biopsy specimens and tissues from pre-clinical models of a variety of musculoskeletal conditions. Histological assessment relies on scoring systems that require expertise, time, and resources, which can lead to an analysis bottleneck. Recent advancem...

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Autores principales: Konnaris, Maxwell A., Brendel, Matthew, Fontana, Mark Alan, Otero, Miguel, Ivashkiv, Lionel B., Wang, Fei, Bell, Richard D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8915507/
https://www.ncbi.nlm.nih.gov/pubmed/35277196
http://dx.doi.org/10.1186/s13075-021-02716-3
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author Konnaris, Maxwell A.
Brendel, Matthew
Fontana, Mark Alan
Otero, Miguel
Ivashkiv, Lionel B.
Wang, Fei
Bell, Richard D.
author_facet Konnaris, Maxwell A.
Brendel, Matthew
Fontana, Mark Alan
Otero, Miguel
Ivashkiv, Lionel B.
Wang, Fei
Bell, Richard D.
author_sort Konnaris, Maxwell A.
collection PubMed
description Histopathology is widely used to analyze clinical biopsy specimens and tissues from pre-clinical models of a variety of musculoskeletal conditions. Histological assessment relies on scoring systems that require expertise, time, and resources, which can lead to an analysis bottleneck. Recent advancements in digital imaging and image processing provide an opportunity to automate histological analyses by implementing advanced statistical models such as machine learning and deep learning, which would greatly benefit the musculoskeletal field. This review provides a high-level overview of machine learning applications, a general pipeline of tissue collection to model selection, and highlights the development of image analysis methods, including some machine learning applications, to solve musculoskeletal problems. We discuss the optimization steps for tissue processing, sectioning, staining, and imaging that are critical for the successful generalizability of an automated image analysis model. We also commenting on the considerations that should be taken into account during model selection and the considerable advances in the field of computer vision outside of histopathology, which can be leveraged for image analysis. Finally, we provide a historic perspective of the previously used histopathological image analysis applications for musculoskeletal diseases, and we contrast it with the advantages of implementing state-of-the-art computational pathology approaches. While some deep learning approaches have been used, there is a significant opportunity to expand the use of such approaches to solve musculoskeletal problems.
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spelling pubmed-89155072022-03-18 Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges Konnaris, Maxwell A. Brendel, Matthew Fontana, Mark Alan Otero, Miguel Ivashkiv, Lionel B. Wang, Fei Bell, Richard D. Arthritis Res Ther Review Histopathology is widely used to analyze clinical biopsy specimens and tissues from pre-clinical models of a variety of musculoskeletal conditions. Histological assessment relies on scoring systems that require expertise, time, and resources, which can lead to an analysis bottleneck. Recent advancements in digital imaging and image processing provide an opportunity to automate histological analyses by implementing advanced statistical models such as machine learning and deep learning, which would greatly benefit the musculoskeletal field. This review provides a high-level overview of machine learning applications, a general pipeline of tissue collection to model selection, and highlights the development of image analysis methods, including some machine learning applications, to solve musculoskeletal problems. We discuss the optimization steps for tissue processing, sectioning, staining, and imaging that are critical for the successful generalizability of an automated image analysis model. We also commenting on the considerations that should be taken into account during model selection and the considerable advances in the field of computer vision outside of histopathology, which can be leveraged for image analysis. Finally, we provide a historic perspective of the previously used histopathological image analysis applications for musculoskeletal diseases, and we contrast it with the advantages of implementing state-of-the-art computational pathology approaches. While some deep learning approaches have been used, there is a significant opportunity to expand the use of such approaches to solve musculoskeletal problems. BioMed Central 2022-03-11 2022 /pmc/articles/PMC8915507/ /pubmed/35277196 http://dx.doi.org/10.1186/s13075-021-02716-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/ Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Review
Konnaris, Maxwell A.
Brendel, Matthew
Fontana, Mark Alan
Otero, Miguel
Ivashkiv, Lionel B.
Wang, Fei
Bell, Richard D.
Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges
title Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges
title_full Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges
title_fullStr Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges
title_full_unstemmed Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges
title_short Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges
title_sort computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8915507/
https://www.ncbi.nlm.nih.gov/pubmed/35277196
http://dx.doi.org/10.1186/s13075-021-02716-3
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