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Three machine learning models for the 2019 Solubility Challenge
We describe three machine learning models submitted to the 2019 Solubility Challenge. All are founded on tree-like classifiers, with one model being based on Random Forest and another on the related Extra Trees algorithm. The third model is a consensus predictor combining the former two with a Baggi...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Association of Physical Chemists
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8915607/ https://www.ncbi.nlm.nih.gov/pubmed/35300305 http://dx.doi.org/10.5599/admet.835 |
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author | Mitchell, John B. O. |
author_facet | Mitchell, John B. O. |
author_sort | Mitchell, John B. O. |
collection | PubMed |
description | We describe three machine learning models submitted to the 2019 Solubility Challenge. All are founded on tree-like classifiers, with one model being based on Random Forest and another on the related Extra Trees algorithm. The third model is a consensus predictor combining the former two with a Bagging classifier. We call this consensus classifier Vox Machinarum, and here discuss how it benefits from the Wisdom of Crowds. On the first 2019 Solubility Challenge test set of 100 low-variance intrinsic aqueous solubilities, Extra Trees is our best classifier. One the other, a high-variance set of 32 molecules, we find that Vox Machinarum and Random Forest both perform a little better than Extra Trees, and almost equally to one another. We also compare the gold standard solubilities from the 2019 Solubility Challenge with a set of literature-based solubilities for most of the same compounds. |
format | Online Article Text |
id | pubmed-8915607 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Association of Physical Chemists |
record_format | MEDLINE/PubMed |
spelling | pubmed-89156072022-03-16 Three machine learning models for the 2019 Solubility Challenge Mitchell, John B. O. ADMET DMPK Original Scientific Papers We describe three machine learning models submitted to the 2019 Solubility Challenge. All are founded on tree-like classifiers, with one model being based on Random Forest and another on the related Extra Trees algorithm. The third model is a consensus predictor combining the former two with a Bagging classifier. We call this consensus classifier Vox Machinarum, and here discuss how it benefits from the Wisdom of Crowds. On the first 2019 Solubility Challenge test set of 100 low-variance intrinsic aqueous solubilities, Extra Trees is our best classifier. One the other, a high-variance set of 32 molecules, we find that Vox Machinarum and Random Forest both perform a little better than Extra Trees, and almost equally to one another. We also compare the gold standard solubilities from the 2019 Solubility Challenge with a set of literature-based solubilities for most of the same compounds. International Association of Physical Chemists 2020-06-15 /pmc/articles/PMC8915607/ /pubmed/35300305 http://dx.doi.org/10.5599/admet.835 Text en Copyright © 2020 by the authors. https://creativecommons.org/licenses/by/4.0/This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ). |
spellingShingle | Original Scientific Papers Mitchell, John B. O. Three machine learning models for the 2019 Solubility Challenge |
title | Three machine learning models for the 2019 Solubility Challenge |
title_full | Three machine learning models for the 2019 Solubility Challenge |
title_fullStr | Three machine learning models for the 2019 Solubility Challenge |
title_full_unstemmed | Three machine learning models for the 2019 Solubility Challenge |
title_short | Three machine learning models for the 2019 Solubility Challenge |
title_sort | three machine learning models for the 2019 solubility challenge |
topic | Original Scientific Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8915607/ https://www.ncbi.nlm.nih.gov/pubmed/35300305 http://dx.doi.org/10.5599/admet.835 |
work_keys_str_mv | AT mitchelljohnbo threemachinelearningmodelsforthe2019solubilitychallenge |