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Adaptive Monte Carlo augmented with normalizing flows
Many problems in the physical sciences, machine learning, and statistical inference necessitate sampling from a high-dimensional, multimodal probability distribution. Markov Chain Monte Carlo (MCMC) algorithms, the ubiquitous tool for this task, typically rely on random local updates to propagate co...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8915891/ https://www.ncbi.nlm.nih.gov/pubmed/35235453 http://dx.doi.org/10.1073/pnas.2109420119 |
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author | Gabrié, Marylou Rotskoff, Grant M. Vanden-Eijnden, Eric |
author_facet | Gabrié, Marylou Rotskoff, Grant M. Vanden-Eijnden, Eric |
author_sort | Gabrié, Marylou |
collection | PubMed |
description | Many problems in the physical sciences, machine learning, and statistical inference necessitate sampling from a high-dimensional, multimodal probability distribution. Markov Chain Monte Carlo (MCMC) algorithms, the ubiquitous tool for this task, typically rely on random local updates to propagate configurations of a given system in a way that ensures that generated configurations will be distributed according to a target probability distribution asymptotically. In high-dimensional settings with multiple relevant metastable basins, local approaches require either immense computational effort or intricately designed importance sampling strategies to capture information about, for example, the relative populations of such basins. Here, we analyze an adaptive MCMC, which augments MCMC sampling with nonlocal transition kernels parameterized with generative models known as normalizing flows. We focus on a setting where there are no preexisting data, as is commonly the case for problems in which MCMC is used. Our method uses 1) an MCMC strategy that blends local moves obtained from any standard transition kernel with those from a generative model to accelerate the sampling and 2) the data generated this way to adapt the generative model and improve its efficacy in the MCMC algorithm. We provide a theoretical analysis of the convergence properties of this algorithm and investigate numerically its efficiency, in particular in terms of its propensity to equilibrate fast between metastable modes whose rough location is known a priori but respective probability weight is not. We show that our algorithm can sample effectively across large free energy barriers, providing dramatic accelerations relative to traditional MCMC algorithms. |
format | Online Article Text |
id | pubmed-8915891 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-89158912022-09-02 Adaptive Monte Carlo augmented with normalizing flows Gabrié, Marylou Rotskoff, Grant M. Vanden-Eijnden, Eric Proc Natl Acad Sci U S A Physical Sciences Many problems in the physical sciences, machine learning, and statistical inference necessitate sampling from a high-dimensional, multimodal probability distribution. Markov Chain Monte Carlo (MCMC) algorithms, the ubiquitous tool for this task, typically rely on random local updates to propagate configurations of a given system in a way that ensures that generated configurations will be distributed according to a target probability distribution asymptotically. In high-dimensional settings with multiple relevant metastable basins, local approaches require either immense computational effort or intricately designed importance sampling strategies to capture information about, for example, the relative populations of such basins. Here, we analyze an adaptive MCMC, which augments MCMC sampling with nonlocal transition kernels parameterized with generative models known as normalizing flows. We focus on a setting where there are no preexisting data, as is commonly the case for problems in which MCMC is used. Our method uses 1) an MCMC strategy that blends local moves obtained from any standard transition kernel with those from a generative model to accelerate the sampling and 2) the data generated this way to adapt the generative model and improve its efficacy in the MCMC algorithm. We provide a theoretical analysis of the convergence properties of this algorithm and investigate numerically its efficiency, in particular in terms of its propensity to equilibrate fast between metastable modes whose rough location is known a priori but respective probability weight is not. We show that our algorithm can sample effectively across large free energy barriers, providing dramatic accelerations relative to traditional MCMC algorithms. National Academy of Sciences 2022-03-02 2022-03-08 /pmc/articles/PMC8915891/ /pubmed/35235453 http://dx.doi.org/10.1073/pnas.2109420119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Physical Sciences Gabrié, Marylou Rotskoff, Grant M. Vanden-Eijnden, Eric Adaptive Monte Carlo augmented with normalizing flows |
title | Adaptive Monte Carlo augmented with normalizing flows |
title_full | Adaptive Monte Carlo augmented with normalizing flows |
title_fullStr | Adaptive Monte Carlo augmented with normalizing flows |
title_full_unstemmed | Adaptive Monte Carlo augmented with normalizing flows |
title_short | Adaptive Monte Carlo augmented with normalizing flows |
title_sort | adaptive monte carlo augmented with normalizing flows |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8915891/ https://www.ncbi.nlm.nih.gov/pubmed/35235453 http://dx.doi.org/10.1073/pnas.2109420119 |
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