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High Resolution, Annual Maps of Field Boundaries for Smallholder-Dominated Croplands at National Scales

Mapping the characteristics of Africa’s smallholder-dominated croplands, including the sizes and numbers of fields, can provide critical insights into food security and a range of other socioeconomic and environmental concerns. However, accurately mapping these systems is difficult because there is...

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Autores principales: Estes, Lyndon D., Ye, Su, Song, Lei, Luo, Boka, Eastman, J. Ronald, Meng, Zhenhua, Zhang, Qi, McRitchie, Dennis, Debats, Stephanie R., Muhando, Justus, Amukoa, Angeline H., Kaloo, Brian W., Makuru, Jackson, Mbatia, Ben K., Muasa, Isaac M., Mucha, Julius, Mugami, Adelide M., Mugami, Judith M., Muinde, Francis W., Mwawaza, Fredrick M., Ochieng, Jeff, Oduol, Charles J., Oduor, Purent, Wanjiku, Thuo, Wanyoike, Joseph G., Avery, Ryan B., Caylor, Kelly K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8916109/
https://www.ncbi.nlm.nih.gov/pubmed/35284820
http://dx.doi.org/10.3389/frai.2021.744863
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author Estes, Lyndon D.
Ye, Su
Song, Lei
Luo, Boka
Eastman, J. Ronald
Meng, Zhenhua
Zhang, Qi
McRitchie, Dennis
Debats, Stephanie R.
Muhando, Justus
Amukoa, Angeline H.
Kaloo, Brian W.
Makuru, Jackson
Mbatia, Ben K.
Muasa, Isaac M.
Mucha, Julius
Mugami, Adelide M.
Mugami, Judith M.
Muinde, Francis W.
Mwawaza, Fredrick M.
Ochieng, Jeff
Oduol, Charles J.
Oduor, Purent
Wanjiku, Thuo
Wanyoike, Joseph G.
Avery, Ryan B.
Caylor, Kelly K.
author_facet Estes, Lyndon D.
Ye, Su
Song, Lei
Luo, Boka
Eastman, J. Ronald
Meng, Zhenhua
Zhang, Qi
McRitchie, Dennis
Debats, Stephanie R.
Muhando, Justus
Amukoa, Angeline H.
Kaloo, Brian W.
Makuru, Jackson
Mbatia, Ben K.
Muasa, Isaac M.
Mucha, Julius
Mugami, Adelide M.
Mugami, Judith M.
Muinde, Francis W.
Mwawaza, Fredrick M.
Ochieng, Jeff
Oduol, Charles J.
Oduor, Purent
Wanjiku, Thuo
Wanyoike, Joseph G.
Avery, Ryan B.
Caylor, Kelly K.
author_sort Estes, Lyndon D.
collection PubMed
description Mapping the characteristics of Africa’s smallholder-dominated croplands, including the sizes and numbers of fields, can provide critical insights into food security and a range of other socioeconomic and environmental concerns. However, accurately mapping these systems is difficult because there is 1) a spatial and temporal mismatch between satellite sensors and smallholder fields, and 2) a lack of high-quality labels needed to train and assess machine learning classifiers. We developed an approach designed to address these two problems, and used it to map Ghana’s croplands. To overcome the spatio-temporal mismatch, we converted daily, high resolution imagery into two cloud-free composites (the primary growing season and subsequent dry season) covering the 2018 agricultural year, providing a seasonal contrast that helps to improve classification accuracy. To address the problem of label availability, we created a platform that rigorously assesses and minimizes label error, and used it to iteratively train a Random Forests classifier with active learning, which identifies the most informative training sample based on prediction uncertainty. Minimizing label errors improved model F1 scores by up to 25%. Active learning increased F1 scores by an average of 9.1% between first and last training iterations, and 2.3% more than models trained with randomly selected labels. We used the resulting 3.7 m map of cropland probabilities within a segmentation algorithm to delineate crop field boundaries. Using an independent map reference sample (n = 1,207), we found that the cropland probability and field boundary maps had respective overall accuracies of 88 and 86.7%, user’s accuracies for the cropland class of 61.2 and 78.9%, and producer’s accuracies of 67.3 and 58.2%. An unbiased area estimate calculated from the map reference sample indicates that cropland covers 17.1% (15.4–18.9%) of Ghana. Using the most accurate validation labels to correct for biases in the segmented field boundaries map, we estimated that the average size and total number of field in Ghana are 1.73 ha and 1,662,281, respectively. Our results demonstrate an adaptable and transferable approach for developing annual, country-scale maps of crop field boundaries, with several features that effectively mitigate the errors inherent in remote sensing of smallholder-dominated agriculture.
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spelling pubmed-89161092022-03-12 High Resolution, Annual Maps of Field Boundaries for Smallholder-Dominated Croplands at National Scales Estes, Lyndon D. Ye, Su Song, Lei Luo, Boka Eastman, J. Ronald Meng, Zhenhua Zhang, Qi McRitchie, Dennis Debats, Stephanie R. Muhando, Justus Amukoa, Angeline H. Kaloo, Brian W. Makuru, Jackson Mbatia, Ben K. Muasa, Isaac M. Mucha, Julius Mugami, Adelide M. Mugami, Judith M. Muinde, Francis W. Mwawaza, Fredrick M. Ochieng, Jeff Oduol, Charles J. Oduor, Purent Wanjiku, Thuo Wanyoike, Joseph G. Avery, Ryan B. Caylor, Kelly K. Front Artif Intell Artificial Intelligence Mapping the characteristics of Africa’s smallholder-dominated croplands, including the sizes and numbers of fields, can provide critical insights into food security and a range of other socioeconomic and environmental concerns. However, accurately mapping these systems is difficult because there is 1) a spatial and temporal mismatch between satellite sensors and smallholder fields, and 2) a lack of high-quality labels needed to train and assess machine learning classifiers. We developed an approach designed to address these two problems, and used it to map Ghana’s croplands. To overcome the spatio-temporal mismatch, we converted daily, high resolution imagery into two cloud-free composites (the primary growing season and subsequent dry season) covering the 2018 agricultural year, providing a seasonal contrast that helps to improve classification accuracy. To address the problem of label availability, we created a platform that rigorously assesses and minimizes label error, and used it to iteratively train a Random Forests classifier with active learning, which identifies the most informative training sample based on prediction uncertainty. Minimizing label errors improved model F1 scores by up to 25%. Active learning increased F1 scores by an average of 9.1% between first and last training iterations, and 2.3% more than models trained with randomly selected labels. We used the resulting 3.7 m map of cropland probabilities within a segmentation algorithm to delineate crop field boundaries. Using an independent map reference sample (n = 1,207), we found that the cropland probability and field boundary maps had respective overall accuracies of 88 and 86.7%, user’s accuracies for the cropland class of 61.2 and 78.9%, and producer’s accuracies of 67.3 and 58.2%. An unbiased area estimate calculated from the map reference sample indicates that cropland covers 17.1% (15.4–18.9%) of Ghana. Using the most accurate validation labels to correct for biases in the segmented field boundaries map, we estimated that the average size and total number of field in Ghana are 1.73 ha and 1,662,281, respectively. Our results demonstrate an adaptable and transferable approach for developing annual, country-scale maps of crop field boundaries, with several features that effectively mitigate the errors inherent in remote sensing of smallholder-dominated agriculture. Frontiers Media S.A. 2022-02-25 /pmc/articles/PMC8916109/ /pubmed/35284820 http://dx.doi.org/10.3389/frai.2021.744863 Text en Copyright © 2022 Estes, Ye, Song, Luo, Eastman, Meng, Zhang, McRitchie, Debats, Muhando, Amukoa, Kaloo, Makuru, Mbatia, Muasa, Mucha, Mugami, Mugami, Muinde, Mwawaza, Ochieng, Oduol, Oduor, Wanjiku, Wanyoike, Avery and Caylor. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Artificial Intelligence
Estes, Lyndon D.
Ye, Su
Song, Lei
Luo, Boka
Eastman, J. Ronald
Meng, Zhenhua
Zhang, Qi
McRitchie, Dennis
Debats, Stephanie R.
Muhando, Justus
Amukoa, Angeline H.
Kaloo, Brian W.
Makuru, Jackson
Mbatia, Ben K.
Muasa, Isaac M.
Mucha, Julius
Mugami, Adelide M.
Mugami, Judith M.
Muinde, Francis W.
Mwawaza, Fredrick M.
Ochieng, Jeff
Oduol, Charles J.
Oduor, Purent
Wanjiku, Thuo
Wanyoike, Joseph G.
Avery, Ryan B.
Caylor, Kelly K.
High Resolution, Annual Maps of Field Boundaries for Smallholder-Dominated Croplands at National Scales
title High Resolution, Annual Maps of Field Boundaries for Smallholder-Dominated Croplands at National Scales
title_full High Resolution, Annual Maps of Field Boundaries for Smallholder-Dominated Croplands at National Scales
title_fullStr High Resolution, Annual Maps of Field Boundaries for Smallholder-Dominated Croplands at National Scales
title_full_unstemmed High Resolution, Annual Maps of Field Boundaries for Smallholder-Dominated Croplands at National Scales
title_short High Resolution, Annual Maps of Field Boundaries for Smallholder-Dominated Croplands at National Scales
title_sort high resolution, annual maps of field boundaries for smallholder-dominated croplands at national scales
topic Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8916109/
https://www.ncbi.nlm.nih.gov/pubmed/35284820
http://dx.doi.org/10.3389/frai.2021.744863
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