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AC010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma

Extensive research indicates that tumor stemness promotes tumor progression. Nonetheless, the underlying roles of stemness-related genes in renal clear cell carcinoma (ccRCC) are unclear. Data used in bioinformatics analysis were downloaded from The Cancer Genome Atlas (TCGA) database. Moreover, the...

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Autores principales: Liu, Yingqing, Wang, Jiawei, Li, Lin, Qin, Haibo, Wei, Yuang, Zhang, Xu, Ren, Xiaohan, Ding, Wei, Shen, Xudong, Li, Guangyao, Lu, Zhongwen, Zhang, Dong, Qin, Chao, Tao, Lingsong, Chen, Xinglin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8917182/
https://www.ncbi.nlm.nih.gov/pubmed/35277527
http://dx.doi.org/10.1038/s41598-022-07070-1
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author Liu, Yingqing
Wang, Jiawei
Li, Lin
Qin, Haibo
Wei, Yuang
Zhang, Xu
Ren, Xiaohan
Ding, Wei
Shen, Xudong
Li, Guangyao
Lu, Zhongwen
Zhang, Dong
Qin, Chao
Tao, Lingsong
Chen, Xinglin
author_facet Liu, Yingqing
Wang, Jiawei
Li, Lin
Qin, Haibo
Wei, Yuang
Zhang, Xu
Ren, Xiaohan
Ding, Wei
Shen, Xudong
Li, Guangyao
Lu, Zhongwen
Zhang, Dong
Qin, Chao
Tao, Lingsong
Chen, Xinglin
author_sort Liu, Yingqing
collection PubMed
description Extensive research indicates that tumor stemness promotes tumor progression. Nonetheless, the underlying roles of stemness-related genes in renal clear cell carcinoma (ccRCC) are unclear. Data used in bioinformatics analysis were downloaded from The Cancer Genome Atlas (TCGA) database. Moreover, the R software, SPSS, and GraphPad Prism 8 were used for mapping and statistical analysis. First, the stemness index of each patient was quantified using a machine learning algorithm. Subsequently, the differentially expressed genes between high and low stemness index were identified as stemness-related genes. Based on these genes, a stable and effective prognostic model was identified to predict the overall survival of patients using a random forest algorithm (Training cohort; 1-year AUC: 0.67; 3-year AUC: 0.79; 5-year AUC: 0.73; Validation cohort; 1-year AUC: 0.66; 3-year AUC: 0.71; 5-year AUC: 0.7). The model genes comprised AC010973.2, RNU6-125P, AP001209.2, Z98885.1, KDM5C-IT1, and AL021368.3. Due to its highest importance evaluated by randomforst analysis, the AC010973.2 gene was selected for further research. In vitro experiments demonstrated that AC010973.2 is highly expressed in ccRCC tissue and cell lines. Meanwhile, its knockdown could significantly inhibit the proliferation of ccRCC cells based on colony formation and CCK8 assays. In summary, our findings reveal that the stemness-related gene AC01097.3 is closely associated with the survival of patients. Besides, it remarkably promotes cell proliferation in ccRCC, hence a novel potential therapeutic target.
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spelling pubmed-89171822022-03-14 AC010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma Liu, Yingqing Wang, Jiawei Li, Lin Qin, Haibo Wei, Yuang Zhang, Xu Ren, Xiaohan Ding, Wei Shen, Xudong Li, Guangyao Lu, Zhongwen Zhang, Dong Qin, Chao Tao, Lingsong Chen, Xinglin Sci Rep Article Extensive research indicates that tumor stemness promotes tumor progression. Nonetheless, the underlying roles of stemness-related genes in renal clear cell carcinoma (ccRCC) are unclear. Data used in bioinformatics analysis were downloaded from The Cancer Genome Atlas (TCGA) database. Moreover, the R software, SPSS, and GraphPad Prism 8 were used for mapping and statistical analysis. First, the stemness index of each patient was quantified using a machine learning algorithm. Subsequently, the differentially expressed genes between high and low stemness index were identified as stemness-related genes. Based on these genes, a stable and effective prognostic model was identified to predict the overall survival of patients using a random forest algorithm (Training cohort; 1-year AUC: 0.67; 3-year AUC: 0.79; 5-year AUC: 0.73; Validation cohort; 1-year AUC: 0.66; 3-year AUC: 0.71; 5-year AUC: 0.7). The model genes comprised AC010973.2, RNU6-125P, AP001209.2, Z98885.1, KDM5C-IT1, and AL021368.3. Due to its highest importance evaluated by randomforst analysis, the AC010973.2 gene was selected for further research. In vitro experiments demonstrated that AC010973.2 is highly expressed in ccRCC tissue and cell lines. Meanwhile, its knockdown could significantly inhibit the proliferation of ccRCC cells based on colony formation and CCK8 assays. In summary, our findings reveal that the stemness-related gene AC01097.3 is closely associated with the survival of patients. Besides, it remarkably promotes cell proliferation in ccRCC, hence a novel potential therapeutic target. Nature Publishing Group UK 2022-03-11 /pmc/articles/PMC8917182/ /pubmed/35277527 http://dx.doi.org/10.1038/s41598-022-07070-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Liu, Yingqing
Wang, Jiawei
Li, Lin
Qin, Haibo
Wei, Yuang
Zhang, Xu
Ren, Xiaohan
Ding, Wei
Shen, Xudong
Li, Guangyao
Lu, Zhongwen
Zhang, Dong
Qin, Chao
Tao, Lingsong
Chen, Xinglin
AC010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma
title AC010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma
title_full AC010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma
title_fullStr AC010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma
title_full_unstemmed AC010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma
title_short AC010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma
title_sort ac010973.2 promotes cell proliferation and is one of six stemness-related genes that predict overall survival of renal clear cell carcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8917182/
https://www.ncbi.nlm.nih.gov/pubmed/35277527
http://dx.doi.org/10.1038/s41598-022-07070-1
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