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The IPASC data format: A consensus data format for photoacoustic imaging
Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effect...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8917284/ https://www.ncbi.nlm.nih.gov/pubmed/35287304 http://dx.doi.org/10.1016/j.pacs.2022.100339 |
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author | Gröhl, Janek Hacker, Lina Cox, Ben T. Dreher, Kris K. Morscher, Stefan Rakotondrainibe, Avotra Varray, François Yip, Lawrence C.M. Vogt, William C. Bohndiek, Sarah E. |
author_facet | Gröhl, Janek Hacker, Lina Cox, Ben T. Dreher, Kris K. Morscher, Stefan Rakotondrainibe, Avotra Varray, François Yip, Lawrence C.M. Vogt, William C. Bohndiek, Sarah E. |
author_sort | Gröhl, Janek |
collection | PubMed |
description | Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effective research collaboration; and efforts to deliver multi-centre clinical trials. To overcome this challenge, the International Photoacoustic Standardisation Consortium (IPASC) has established a data format with a defined consensus metadata structure and developed an open-source software application programming interface (API) to enable conversion from proprietary file formats into the IPASC format. The format is based on Hierarchical Data Format 5 (HDF5) and designed to store photoacoustic raw time series data. Internal quality control mechanisms are included to ensure completeness and consistency of the converted data. By unifying the variety of proprietary data and metadata definitions into a consensus format, IPASC hopes to facilitate the exchange and comparison of PAI data. |
format | Online Article Text |
id | pubmed-8917284 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-89172842022-03-13 The IPASC data format: A consensus data format for photoacoustic imaging Gröhl, Janek Hacker, Lina Cox, Ben T. Dreher, Kris K. Morscher, Stefan Rakotondrainibe, Avotra Varray, François Yip, Lawrence C.M. Vogt, William C. Bohndiek, Sarah E. Photoacoustics Research Article Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effective research collaboration; and efforts to deliver multi-centre clinical trials. To overcome this challenge, the International Photoacoustic Standardisation Consortium (IPASC) has established a data format with a defined consensus metadata structure and developed an open-source software application programming interface (API) to enable conversion from proprietary file formats into the IPASC format. The format is based on Hierarchical Data Format 5 (HDF5) and designed to store photoacoustic raw time series data. Internal quality control mechanisms are included to ensure completeness and consistency of the converted data. By unifying the variety of proprietary data and metadata definitions into a consensus format, IPASC hopes to facilitate the exchange and comparison of PAI data. Elsevier 2022-02-26 /pmc/articles/PMC8917284/ /pubmed/35287304 http://dx.doi.org/10.1016/j.pacs.2022.100339 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Research Article Gröhl, Janek Hacker, Lina Cox, Ben T. Dreher, Kris K. Morscher, Stefan Rakotondrainibe, Avotra Varray, François Yip, Lawrence C.M. Vogt, William C. Bohndiek, Sarah E. The IPASC data format: A consensus data format for photoacoustic imaging |
title | The IPASC data format: A consensus data format for photoacoustic imaging |
title_full | The IPASC data format: A consensus data format for photoacoustic imaging |
title_fullStr | The IPASC data format: A consensus data format for photoacoustic imaging |
title_full_unstemmed | The IPASC data format: A consensus data format for photoacoustic imaging |
title_short | The IPASC data format: A consensus data format for photoacoustic imaging |
title_sort | ipasc data format: a consensus data format for photoacoustic imaging |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8917284/ https://www.ncbi.nlm.nih.gov/pubmed/35287304 http://dx.doi.org/10.1016/j.pacs.2022.100339 |
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