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The IPASC data format: A consensus data format for photoacoustic imaging

Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effect...

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Autores principales: Gröhl, Janek, Hacker, Lina, Cox, Ben T., Dreher, Kris K., Morscher, Stefan, Rakotondrainibe, Avotra, Varray, François, Yip, Lawrence C.M., Vogt, William C., Bohndiek, Sarah E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8917284/
https://www.ncbi.nlm.nih.gov/pubmed/35287304
http://dx.doi.org/10.1016/j.pacs.2022.100339
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author Gröhl, Janek
Hacker, Lina
Cox, Ben T.
Dreher, Kris K.
Morscher, Stefan
Rakotondrainibe, Avotra
Varray, François
Yip, Lawrence C.M.
Vogt, William C.
Bohndiek, Sarah E.
author_facet Gröhl, Janek
Hacker, Lina
Cox, Ben T.
Dreher, Kris K.
Morscher, Stefan
Rakotondrainibe, Avotra
Varray, François
Yip, Lawrence C.M.
Vogt, William C.
Bohndiek, Sarah E.
author_sort Gröhl, Janek
collection PubMed
description Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effective research collaboration; and efforts to deliver multi-centre clinical trials. To overcome this challenge, the International Photoacoustic Standardisation Consortium (IPASC) has established a data format with a defined consensus metadata structure and developed an open-source software application programming interface (API) to enable conversion from proprietary file formats into the IPASC format. The format is based on Hierarchical Data Format 5 (HDF5) and designed to store photoacoustic raw time series data. Internal quality control mechanisms are included to ensure completeness and consistency of the converted data. By unifying the variety of proprietary data and metadata definitions into a consensus format, IPASC hopes to facilitate the exchange and comparison of PAI data.
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spelling pubmed-89172842022-03-13 The IPASC data format: A consensus data format for photoacoustic imaging Gröhl, Janek Hacker, Lina Cox, Ben T. Dreher, Kris K. Morscher, Stefan Rakotondrainibe, Avotra Varray, François Yip, Lawrence C.M. Vogt, William C. Bohndiek, Sarah E. Photoacoustics Research Article Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effective research collaboration; and efforts to deliver multi-centre clinical trials. To overcome this challenge, the International Photoacoustic Standardisation Consortium (IPASC) has established a data format with a defined consensus metadata structure and developed an open-source software application programming interface (API) to enable conversion from proprietary file formats into the IPASC format. The format is based on Hierarchical Data Format 5 (HDF5) and designed to store photoacoustic raw time series data. Internal quality control mechanisms are included to ensure completeness and consistency of the converted data. By unifying the variety of proprietary data and metadata definitions into a consensus format, IPASC hopes to facilitate the exchange and comparison of PAI data. Elsevier 2022-02-26 /pmc/articles/PMC8917284/ /pubmed/35287304 http://dx.doi.org/10.1016/j.pacs.2022.100339 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Gröhl, Janek
Hacker, Lina
Cox, Ben T.
Dreher, Kris K.
Morscher, Stefan
Rakotondrainibe, Avotra
Varray, François
Yip, Lawrence C.M.
Vogt, William C.
Bohndiek, Sarah E.
The IPASC data format: A consensus data format for photoacoustic imaging
title The IPASC data format: A consensus data format for photoacoustic imaging
title_full The IPASC data format: A consensus data format for photoacoustic imaging
title_fullStr The IPASC data format: A consensus data format for photoacoustic imaging
title_full_unstemmed The IPASC data format: A consensus data format for photoacoustic imaging
title_short The IPASC data format: A consensus data format for photoacoustic imaging
title_sort ipasc data format: a consensus data format for photoacoustic imaging
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8917284/
https://www.ncbi.nlm.nih.gov/pubmed/35287304
http://dx.doi.org/10.1016/j.pacs.2022.100339
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