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Thermal and Mechanochemical Tuning of the Porphyrin Singlet-Triplet Gap for Selective Energy Transfer Processes: A Molecular Dynamics Approach
[Image: see text] Molecular dynamics simulations provide fundamental knowledge on the reaction mechanism of a given simulated molecular process. Nevertheless, other methodologies based on the “static” exploration of potential energy surfaces are usually employed to firmly provide the reaction coordi...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8919258/ https://www.ncbi.nlm.nih.gov/pubmed/34351751 http://dx.doi.org/10.1021/acs.jctc.1c00291 |
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author | Zapata, Felipe Nucci, Martina Castaño, Obis Marazzi, Marco Frutos, Luis Manuel |
author_facet | Zapata, Felipe Nucci, Martina Castaño, Obis Marazzi, Marco Frutos, Luis Manuel |
author_sort | Zapata, Felipe |
collection | PubMed |
description | [Image: see text] Molecular dynamics simulations provide fundamental knowledge on the reaction mechanism of a given simulated molecular process. Nevertheless, other methodologies based on the “static” exploration of potential energy surfaces are usually employed to firmly provide the reaction coordinate directly related to the reaction mechanism, as is the case in intrinsic reaction coordinates for thermally activated reactions. Photoinduced processes in molecular systems can also be studied with these two strategies, as is the case in the triplet energy transfer process. Triplet energy transfer is a fundamental photophysical process in photochemistry and photobiology, being for instance involved in photodynamic therapy, when generating the highly reactive singlet oxygen species. Here, we study the triplet energy transfer process between porphyrin, a prototypical energy transfer donor, and different biologically relevant acceptors, including molecular oxygen, carotenoids, and rhodopsin. The results obtained by means of nanosecond time-scale molecular dynamics simulations are compared to the “static” determination of the reaction coordinate for such a thermal process, leading to the distortions determining an effective energy transfer. This knowledge was finally applied to propose porphyrin derivatives for producing the required structural modifications in order to tune their singlet-triplet energy gap, thus introducing a mechanochemical description of the mechanism. |
format | Online Article Text |
id | pubmed-8919258 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-89192582022-03-15 Thermal and Mechanochemical Tuning of the Porphyrin Singlet-Triplet Gap for Selective Energy Transfer Processes: A Molecular Dynamics Approach Zapata, Felipe Nucci, Martina Castaño, Obis Marazzi, Marco Frutos, Luis Manuel J Chem Theory Comput [Image: see text] Molecular dynamics simulations provide fundamental knowledge on the reaction mechanism of a given simulated molecular process. Nevertheless, other methodologies based on the “static” exploration of potential energy surfaces are usually employed to firmly provide the reaction coordinate directly related to the reaction mechanism, as is the case in intrinsic reaction coordinates for thermally activated reactions. Photoinduced processes in molecular systems can also be studied with these two strategies, as is the case in the triplet energy transfer process. Triplet energy transfer is a fundamental photophysical process in photochemistry and photobiology, being for instance involved in photodynamic therapy, when generating the highly reactive singlet oxygen species. Here, we study the triplet energy transfer process between porphyrin, a prototypical energy transfer donor, and different biologically relevant acceptors, including molecular oxygen, carotenoids, and rhodopsin. The results obtained by means of nanosecond time-scale molecular dynamics simulations are compared to the “static” determination of the reaction coordinate for such a thermal process, leading to the distortions determining an effective energy transfer. This knowledge was finally applied to propose porphyrin derivatives for producing the required structural modifications in order to tune their singlet-triplet energy gap, thus introducing a mechanochemical description of the mechanism. American Chemical Society 2021-08-05 2021-09-14 /pmc/articles/PMC8919258/ /pubmed/34351751 http://dx.doi.org/10.1021/acs.jctc.1c00291 Text en © 2021 American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Zapata, Felipe Nucci, Martina Castaño, Obis Marazzi, Marco Frutos, Luis Manuel Thermal and Mechanochemical Tuning of the Porphyrin Singlet-Triplet Gap for Selective Energy Transfer Processes: A Molecular Dynamics Approach |
title | Thermal and Mechanochemical Tuning of the Porphyrin
Singlet-Triplet Gap for Selective Energy Transfer Processes: A Molecular
Dynamics Approach |
title_full | Thermal and Mechanochemical Tuning of the Porphyrin
Singlet-Triplet Gap for Selective Energy Transfer Processes: A Molecular
Dynamics Approach |
title_fullStr | Thermal and Mechanochemical Tuning of the Porphyrin
Singlet-Triplet Gap for Selective Energy Transfer Processes: A Molecular
Dynamics Approach |
title_full_unstemmed | Thermal and Mechanochemical Tuning of the Porphyrin
Singlet-Triplet Gap for Selective Energy Transfer Processes: A Molecular
Dynamics Approach |
title_short | Thermal and Mechanochemical Tuning of the Porphyrin
Singlet-Triplet Gap for Selective Energy Transfer Processes: A Molecular
Dynamics Approach |
title_sort | thermal and mechanochemical tuning of the porphyrin
singlet-triplet gap for selective energy transfer processes: a molecular
dynamics approach |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8919258/ https://www.ncbi.nlm.nih.gov/pubmed/34351751 http://dx.doi.org/10.1021/acs.jctc.1c00291 |
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