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AI-driven quantification of ground glass opacities in lungs of COVID-19 patients using 3D computed tomography imaging
OBJECTIVES: Ground-glass opacity (GGO)—a hazy, gray appearing density on computed tomography (CT) of lungs—is one of the hallmark features of SARS-CoV-2 in COVID-19 patients. This AI-driven study is focused on segmentation, morphology, and distribution patterns of GGOs. METHOD: We use an AI-driven u...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8920286/ https://www.ncbi.nlm.nih.gov/pubmed/35286309 http://dx.doi.org/10.1371/journal.pone.0263916 |
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author | Saha, Monjoy Amin, Sagar B. Sharma, Ashish Kumar, T. K. Satish Kalia, Rajiv K. |
author_facet | Saha, Monjoy Amin, Sagar B. Sharma, Ashish Kumar, T. K. Satish Kalia, Rajiv K. |
author_sort | Saha, Monjoy |
collection | PubMed |
description | OBJECTIVES: Ground-glass opacity (GGO)—a hazy, gray appearing density on computed tomography (CT) of lungs—is one of the hallmark features of SARS-CoV-2 in COVID-19 patients. This AI-driven study is focused on segmentation, morphology, and distribution patterns of GGOs. METHOD: We use an AI-driven unsupervised machine learning approach called PointNet++ to detect and quantify GGOs in CT scans of COVID-19 patients and to assess the severity of the disease. We have conducted our study on the “MosMedData”, which contains CT lung scans of 1110 patients with or without COVID-19 infections. We quantify the morphologies of GGOs using Minkowski tensors and compute the abnormality score of individual regions of segmented lung and GGOs. RESULTS: PointNet++ detects GGOs with the highest evaluation accuracy (98%), average class accuracy (95%), and intersection over union (92%) using only a fraction of 3D data. On average, the shapes of GGOs in the COVID-19 datasets deviate from sphericity by 15% and anisotropies in GGOs are dominated by dipole and hexapole components. These anisotropies may help to quantitatively delineate GGOs of COVID-19 from other lung diseases. CONCLUSION: The PointNet++ and the Minkowski tensor based morphological approach together with abnormality analysis will provide radiologists and clinicians with a valuable set of tools when interpreting CT lung scans of COVID-19 patients. Implementation would be particularly useful in countries severely devastated by COVID-19 such as India, where the number of cases has outstripped available resources creating delays or even breakdowns in patient care. This AI-driven approach synthesizes both the unique GGO distribution pattern and severity of the disease to allow for more efficient diagnosis, triaging and conservation of limited resources. |
format | Online Article Text |
id | pubmed-8920286 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-89202862022-03-15 AI-driven quantification of ground glass opacities in lungs of COVID-19 patients using 3D computed tomography imaging Saha, Monjoy Amin, Sagar B. Sharma, Ashish Kumar, T. K. Satish Kalia, Rajiv K. PLoS One Research Article OBJECTIVES: Ground-glass opacity (GGO)—a hazy, gray appearing density on computed tomography (CT) of lungs—is one of the hallmark features of SARS-CoV-2 in COVID-19 patients. This AI-driven study is focused on segmentation, morphology, and distribution patterns of GGOs. METHOD: We use an AI-driven unsupervised machine learning approach called PointNet++ to detect and quantify GGOs in CT scans of COVID-19 patients and to assess the severity of the disease. We have conducted our study on the “MosMedData”, which contains CT lung scans of 1110 patients with or without COVID-19 infections. We quantify the morphologies of GGOs using Minkowski tensors and compute the abnormality score of individual regions of segmented lung and GGOs. RESULTS: PointNet++ detects GGOs with the highest evaluation accuracy (98%), average class accuracy (95%), and intersection over union (92%) using only a fraction of 3D data. On average, the shapes of GGOs in the COVID-19 datasets deviate from sphericity by 15% and anisotropies in GGOs are dominated by dipole and hexapole components. These anisotropies may help to quantitatively delineate GGOs of COVID-19 from other lung diseases. CONCLUSION: The PointNet++ and the Minkowski tensor based morphological approach together with abnormality analysis will provide radiologists and clinicians with a valuable set of tools when interpreting CT lung scans of COVID-19 patients. Implementation would be particularly useful in countries severely devastated by COVID-19 such as India, where the number of cases has outstripped available resources creating delays or even breakdowns in patient care. This AI-driven approach synthesizes both the unique GGO distribution pattern and severity of the disease to allow for more efficient diagnosis, triaging and conservation of limited resources. Public Library of Science 2022-03-14 /pmc/articles/PMC8920286/ /pubmed/35286309 http://dx.doi.org/10.1371/journal.pone.0263916 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication. |
spellingShingle | Research Article Saha, Monjoy Amin, Sagar B. Sharma, Ashish Kumar, T. K. Satish Kalia, Rajiv K. AI-driven quantification of ground glass opacities in lungs of COVID-19 patients using 3D computed tomography imaging |
title | AI-driven quantification of ground glass opacities in lungs of COVID-19 patients using 3D computed tomography imaging |
title_full | AI-driven quantification of ground glass opacities in lungs of COVID-19 patients using 3D computed tomography imaging |
title_fullStr | AI-driven quantification of ground glass opacities in lungs of COVID-19 patients using 3D computed tomography imaging |
title_full_unstemmed | AI-driven quantification of ground glass opacities in lungs of COVID-19 patients using 3D computed tomography imaging |
title_short | AI-driven quantification of ground glass opacities in lungs of COVID-19 patients using 3D computed tomography imaging |
title_sort | ai-driven quantification of ground glass opacities in lungs of covid-19 patients using 3d computed tomography imaging |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8920286/ https://www.ncbi.nlm.nih.gov/pubmed/35286309 http://dx.doi.org/10.1371/journal.pone.0263916 |
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