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The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant
Periploca forrestii Schltr. is a traditional medicine plant in southwestern China. In this study, we characterize the complete chloroplast (cp) genome of P. forrestii based on next-generation sequencing. The cp genome is 154,140 bp in size with an overall GC content 38.2%, including a large single-c...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8920375/ https://www.ncbi.nlm.nih.gov/pubmed/35295911 http://dx.doi.org/10.1080/23802359.2022.2049459 |
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author | Long, Jin-lan Zhang, Na Wu, Yuan Zhang, Yong-pin Wu, Zhi-kun |
author_facet | Long, Jin-lan Zhang, Na Wu, Yuan Zhang, Yong-pin Wu, Zhi-kun |
author_sort | Long, Jin-lan |
collection | PubMed |
description | Periploca forrestii Schltr. is a traditional medicine plant in southwestern China. In this study, we characterize the complete chloroplast (cp) genome of P. forrestii based on next-generation sequencing. The cp genome is 154,140 bp in size with an overall GC content 38.2%, including a large single-copy (LSC) region (84,941 bp), a small single-copy (SSC) region of 17,619 bp, and two inverted repeats (IRs) regions, each of 25,790 bp. A total of 130 genes (85 protein-coding genes, 8 ribosomal RNA (rRNA) genes, and 37 transfer RNA (tRNA genes)) are annotated in the whole chloroplast genome, containing 113 unique genes (79 unique CDSs, 30 unique tRNAs, and 4 unique rRNAs). The phylogenetic analysis indicated that P. forrestii formed a monophyletic clade with the same genus plant P. sepium, showing that they have close relationship. The complete chloroplast genome of P. forrestii provides valuable genomic information for the phylogeny, molecular identification and sustainable utilization of this species. |
format | Online Article Text |
id | pubmed-8920375 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-89203752022-03-15 The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant Long, Jin-lan Zhang, Na Wu, Yuan Zhang, Yong-pin Wu, Zhi-kun Mitochondrial DNA B Resour Mitogenome Announcement Periploca forrestii Schltr. is a traditional medicine plant in southwestern China. In this study, we characterize the complete chloroplast (cp) genome of P. forrestii based on next-generation sequencing. The cp genome is 154,140 bp in size with an overall GC content 38.2%, including a large single-copy (LSC) region (84,941 bp), a small single-copy (SSC) region of 17,619 bp, and two inverted repeats (IRs) regions, each of 25,790 bp. A total of 130 genes (85 protein-coding genes, 8 ribosomal RNA (rRNA) genes, and 37 transfer RNA (tRNA genes)) are annotated in the whole chloroplast genome, containing 113 unique genes (79 unique CDSs, 30 unique tRNAs, and 4 unique rRNAs). The phylogenetic analysis indicated that P. forrestii formed a monophyletic clade with the same genus plant P. sepium, showing that they have close relationship. The complete chloroplast genome of P. forrestii provides valuable genomic information for the phylogeny, molecular identification and sustainable utilization of this species. Taylor & Francis 2022-03-09 /pmc/articles/PMC8920375/ /pubmed/35295911 http://dx.doi.org/10.1080/23802359.2022.2049459 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Long, Jin-lan Zhang, Na Wu, Yuan Zhang, Yong-pin Wu, Zhi-kun The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant |
title | The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant |
title_full | The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant |
title_fullStr | The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant |
title_full_unstemmed | The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant |
title_short | The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant |
title_sort | complete chloroplast genome of periploca forrestii (apocynaceae), a traditional chinese medicinal plant |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8920375/ https://www.ncbi.nlm.nih.gov/pubmed/35295911 http://dx.doi.org/10.1080/23802359.2022.2049459 |
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